View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9623_low_31 (Length: 370)
Name: NF9623_low_31
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 4133763 - 4134035
Alignment:
| Q |
18 |
accagaagcacaagacaattataactgccacaacacccgcaaggaaaaaatgcagaaaacggggtgttggagtagtcgaatacgtgtcatgtattccata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4133763 |
accagaagcacaagacaattataactgccacaacacccgcaaggaaaaaatgcagaaaacggggtgttggagtagtcgaatacgtgtcatgtattccata |
4133862 |
T |
|
| Q |
118 |
ttcatccatcggtttgaagagaaagagtttttgccataaaaaggaatgatgctcaaatatattgcactcgcagcagtagtcctatattagtaccaaaaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4133863 |
ttcatccatcggtttgaagagaaagagtttttgccataaaaaggaatgatgctcaaatatattgcactcgcagcagtagtactatattagtaccaaaaag |
4133962 |
T |
|
| Q |
218 |
gaagaaagagtttttctatattgtgacctctaaaattgcataatagaaaaaccgtcaaatatgagataggatc |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4133963 |
gaagaaagagtttttctatattgtgacctctaaaattgcataatagaaaaactgtcaaatatgagataggatc |
4134035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 4134056 - 4134129
Alignment:
| Q |
286 |
ggatccgttgagaccaaattttaacctttcatttcattttaatcaatgacttattattactcactaaaaaccta |
359 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4134056 |
ggattcgttgacaccaaatcttaacctttcatttcattttaatcaatgacttataattactcactaaaaaccta |
4134129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 14826220 - 14826142
Alignment:
| Q |
276 |
atatgagataggatccgttgagaccaaattttaacctttcatttcattttaatcaatgacttattattactcactaaaa |
354 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
14826220 |
atatgagataggatccgttgacaccaaatcttaacctttcatttcattttaatcaatggtttataattactcactaaaa |
14826142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 3654027 - 3654075
Alignment:
| Q |
276 |
atatgagataggatccgttgagaccaaattttaacctttcatttcattt |
324 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||| |||| |||| |
|
|
| T |
3654027 |
atatgagataggatccgttgacaccaaattatatcctttgatttgattt |
3654075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University