View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9623_low_35 (Length: 346)
Name: NF9623_low_35
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_35 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 42875333 - 42875654
Alignment:
| Q |
18 |
acaaaaaggtcttgtctagtgacaagaccaagttcaattgcttctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42875333 |
acaaaaaggtcttgtctagtgacaagaccaagttcaattgcttctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagt |
42875432 |
T |
|
| Q |
118 |
gtctataaccttgtttgatggcttcaatgattgcatcttttgtgtctttcttgcatgtgaagtcaggggctgatcccattccaaccactggcatcttcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42875433 |
gtctataaccttgtttgatggcttcaatgattgcatcttttgtgtctttcttacatgtgaagtcaggggctgatcccattccaaccactggcatcttcaa |
42875532 |
T |
|
| Q |
218 |
ttgactagatgtgtttgtaagaaactttgttgggatttcaacactgcccatgttgttatttttgggttggactaaggttcaatgttaagattgttacact |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42875533 |
ttgactagatgtgtttgtaagaacctttgttgggatttcaacactgcccatgttgttatttttgggttggactaaggttcaatgttaagattggtacact |
42875632 |
T |
|
| Q |
318 |
atgagagttatgtttgatgatg |
339 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42875633 |
atgagagttatgtttgatgatg |
42875654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 42889968 - 42889647
Alignment:
| Q |
18 |
acaaaaaggtcttgtctagtgacaagaccaagttcaattgcttctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42889968 |
acaaaaaggtcttgtctagtgacaagaccaagttcaattgcttctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagt |
42889869 |
T |
|
| Q |
118 |
gtctataaccttgtttgatggcttcaatgattgcatcttttgtgtctttcttgcatgtgaagtcaggggctgatcccattccaaccactggcatcttcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42889868 |
gtctataaccttgtttgatggcttcaatgattgcatcttttgtgtctttcttacatgtgaagtcaggggctgatcccattccaaccactggcatcttcaa |
42889769 |
T |
|
| Q |
218 |
ttgactagatgtgtttgtaagaaactttgttgggatttcaacactgcccatgttgttatttttgggttggactaaggttcaatgttaagattgttacact |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42889768 |
ttgactagatgtgtttgtaagaacctttgttgggatttcaacactgcccatgttgttatttttgggttggactaaggttcaatgttaagattggtacact |
42889669 |
T |
|
| Q |
318 |
atgagagttatgtttgatgatg |
339 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42889668 |
atgagagttatgtttgatgatg |
42889647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 42884464 - 42884768
Alignment:
| Q |
18 |
acaaaaaggtcttgtctagtgacaagaccaagttcaattgcttctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42884464 |
acaaaaaggtcttgtctagtgacaagaccaagttcaattgcttctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagt |
42884563 |
T |
|
| Q |
118 |
gtctataaccttgtttgatggcttcaatgattgcatcttttgtgtctttcttgcatgtgaagtcaggggctgatcccattccaaccactggcatcttcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42884564 |
gtctataaccttgtttgatggcttcaatgattgcatcttttgtgtctttcttacatgtgaagtcaggggctgatcccattccaaccactggcatcttcaa |
42884663 |
T |
|
| Q |
218 |
ttgactagatgtgtttgtaagaaactttgttgggatttcaacactgcccatgttgttatttttgggttggactaaggttcaatgttaagattgttacact |
317 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42884664 |
ttgactagatgtgtttgtaagaacctttgttgggatttcaacactgcccatgttgttatttttgggttggactaaggttcaatgttaagattgttacact |
42884763 |
T |
|
| Q |
318 |
atgag |
322 |
Q |
| |
|
|||| |
|
|
| T |
42884764 |
ttgag |
42884768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 37505595 - 37505662
Alignment:
| Q |
93 |
ccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgt |
160 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
37505595 |
ccatatgcagcagcagcatcaaaatgtctataaccttgtttgatggcttcaaggacagcatcttttgt |
37505662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University