View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_37 (Length: 343)
Name: NF9623_low_37
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 43186330 - 43186018
Alignment:
| Q |
19 |
agaaaattatcagtttttatcatcattgttgttaaatagcagctgta--tagctcgtagcatagccaatttcaagcaaaccactcttctccgcgatctgc |
116 |
Q |
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| T |
43186330 |
agaaaattatcagttgtaatcatcattgttgttaaatagcagctgtacatagctcgtagcatagccaatttcaagcaaaccactcttctccgcgatctgc |
43186231 |
T |
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| Q |
117 |
aatcgacaacagtggttatttttaaaccattcattttggcttaagttggatttaccaattgaaaaaaccaattgctaagatgttagtggttgttttagct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43186230 |
aatcgacaacagtggttatttttaaaccattcattttggcttaagttggatttaccaattgaaaaaaccaattgctaagatgttagtggttgtttcagct |
43186131 |
T |
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| Q |
217 |
tcataacatctgaagaaatgttgagttagcaaccattttccgctctgcgatgtaggttttccagaggttagagnnnnnnngcaacaagtgccaggcttgt |
316 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43186130 |
tcataacatctgaagaaatgttgacttagcaaccattttccactctgcgatgtaggttttccagaggttagaggttttttgcaacaagtgccaggcttgt |
43186031 |
T |
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| Q |
317 |
gctcttcacaggt |
329 |
Q |
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||||||||||||| |
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| T |
43186030 |
gctcttcacaggt |
43186018 |
T |
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