View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_39 (Length: 341)
Name: NF9623_low_39
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 23 - 323
Target Start/End: Complemental strand, 33888906 - 33888606
Alignment:
| Q |
23 |
ggcacaacataacttgttagttggttatgacctacnnnnnnntattatctcttttaagcctattgattgcaccaagttacgattgagtgtagaagtgctt |
122 |
Q |
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| T |
33888906 |
ggcacaacataacttgttagttggttatgacctacaaaaaaatattatctcttttaagcctattgattgcaccaagttatgattgagtgtagaagtgctt |
33888807 |
T |
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| Q |
123 |
tattaatctaaattttccattgtcataatattttgccactaacttgtatcaatcatctaatgtttttctaacgaagtagttacttaaaaataaaaaagat |
222 |
Q |
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| T |
33888806 |
tattaatctaaattttccattgtcataatattttgccactaacttgtatcaatcatctaatgtttttctaacgaagtagttacttaaaaataaaaaagat |
33888707 |
T |
|
| Q |
223 |
atttgataaacaaaatccctcnnnnnnnnatttnnnnnnngaagataaaatagcgaaccctagagcaagtcatcatcgatctcttgctcctgttgtctgt |
322 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33888706 |
atttgataaacaaaatccctcttttttttatttaaaaaaagaagataaaatagcgaaccctagagcaagtcatcatcgatctcttgctcctgttgtctgt |
33888607 |
T |
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| Q |
323 |
g |
323 |
Q |
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| T |
33888606 |
g |
33888606 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 28403654 - 28403712
Alignment:
| Q |
66 |
attatctcttttaagcctattgattgcaccaagttacgattgagtgtagaagtgcttta |
124 |
Q |
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||||||||||||||||||| |||||||||||||| |||| |||||| | |||||||| |
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| T |
28403654 |
attatctcttttaagcctactgattgcaccaagtattgattcagtgtaaacgtgcttta |
28403712 |
T |
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