View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_40 (Length: 332)
Name: NF9623_low_40
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 7488153 - 7488460
Alignment:
| Q |
10 |
gcagagactcggaggaacacgatggacctctctagttgttgggttccacataattaactcatcaagacaactcttatgaaaccaacacaaaccttggaga |
109 |
Q |
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| T |
7488153 |
gcagagactcggaggaacacggtggacctctctagttgtagggttccacataattaactcatcaagacaactcttatgaaaccaacacaaaccttggaga |
7488252 |
T |
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| Q |
110 |
cagaaaacgccattgcaactaccatatgattccattcttataaaagtgcgacaattgctgttggaaaagagggatttgatgtgtattacggtgtcacatg |
209 |
Q |
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| T |
7488253 |
cagaaaacgccattgcaactaccatatgattccattcttataaaagtgcgacaattgctgttggaaaagagggatttgatgtgtattacggtgtgacatg |
7488352 |
T |
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| Q |
210 |
agagaagagttacatagggttttgtttcatgaaggatcatgagattaggactgtcagacatgtttatgtgcctccttttcagaaaggtggggttctgagt |
309 |
Q |
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| T |
7488353 |
agagaagagttacatagggttttgtttcatgaaggatcatgagattaggactatcagacatgtttatgtgcctccttttcagaaaggtggggttctgagt |
7488452 |
T |
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| Q |
310 |
aagatcat |
317 |
Q |
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|||||||| |
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| T |
7488453 |
aagatcat |
7488460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 296
Target Start/End: Complemental strand, 6943732 - 6943604
Alignment:
| Q |
168 |
tgttggaaaagagggatttgatgtgtattacggtgtcacatgagagaagagttacatagggttttgtttcatgaaggatcatgagattaggactgtcaga |
267 |
Q |
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| T |
6943732 |
tgttggaaaagggggatttgatgtgtattaggttgtcacatgagagaagggttacataattttgttttttattaaggatcatgagactaggactatcatg |
6943633 |
T |
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| Q |
268 |
catgtttatgtgcctccttttcagaaagg |
296 |
Q |
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| T |
6943632 |
catattcatgtgccgccgtttcagaaagg |
6943604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 7475296 - 7475354
Alignment:
| Q |
23 |
ggaacacgatggacctctctagttgttgggttccacataattaactcatcaagacaact |
81 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
7475296 |
ggaatacgatggacctctctagttgttgggttccaaataattaactcatctagacaact |
7475354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 261
Target Start/End: Original strand, 7475396 - 7475564
Alignment:
| Q |
90 |
accaacacaaaccttggagacagaaaacgccattgcaactaccatatgattccattcttataaaagtgcgacaattgctgttggaaaagagggatttgat |
189 |
Q |
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| T |
7475396 |
accaacacaaacctttgagacagaaaacaccattgaaactaccatatgattcaattgttat---aggttgatgggagttgctggaaaagggggatttgat |
7475492 |
T |
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| Q |
190 |
gtgtattacggtgtcacatgagagaagagttacatagggttttgtttcatgaaggatcatgagattaggact |
261 |
Q |
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||| |||| | |||||| ||||||||| |||| |||||||| | ||||| |||||| ||||||||| |||| |
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| T |
7475493 |
gtgcattaggttgtcacgtgagagaagggttatatagggttgttcttcataaaggattatgagattatgact |
7475564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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