View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_43 (Length: 313)
Name: NF9623_low_43
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_43 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 7703637 - 7703935
Alignment:
| Q |
16 |
attacaagtggaaatagaattgaaactaatatggcaaactgaattagagaaagactcggtttctggaaaatcaattttgtagaaactaccaactaatcta |
115 |
Q |
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| T |
7703637 |
attacaagtggaaatagaattgaaactaatatggcaaactgaattagagaaagactcggtttctggaaaatcaattttgtagaaactaccaactaatcta |
7703736 |
T |
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| Q |
116 |
gttgtaccaatcatcctcttggtagtgtcctgcaaaaattagaagtaaagacagcaacatatcttggaactgaaattaaattggcatgaaagttagtaac |
215 |
Q |
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| T |
7703737 |
gttgtaccaatcatcctcttggtagtgtcctgcaaaaattagaagtaaagacagcaacatatcttggaactgaaattaaattggcatgaaagttagtaac |
7703836 |
T |
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| Q |
216 |
aacaaaaatactgtgtt-ttagaatgaaatgcacatgaagcttttgtcttagacagctgaagcaaattcatgagcctgttgtattgatcttgtgtaaac |
313 |
Q |
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| T |
7703837 |
aacaaaaatactttgttggtagaatgaaatgcacatgaagcttttgtcttagactgctgaagcaaattcatgagactgttgtattgatcttgtgtaaac |
7703935 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 38823017 - 38822950
Alignment:
| Q |
86 |
tcaattttgtagaaactaccaactaatctagttgtaccaatcatcctcttggtagtgtcctgcaaaaa |
153 |
Q |
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| T |
38823017 |
tcaattatgtagagaccaccaaccaatctagctgtaccaatcgtcttcttggtagtttcctgcaaaaa |
38822950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 17884307 - 17884374
Alignment:
| Q |
86 |
tcaattttgtagaaactaccaactaatctagttgtaccaatcatcctcttggtagtgtcctgcaaaaa |
153 |
Q |
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| T |
17884307 |
tcaattatgtagagaccaccaaccaatctagctgtaccaatcgtcttcttggtagtttcctgcaaaaa |
17884374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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