View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_44 (Length: 296)
Name: NF9623_low_44
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 33742313 - 33742047
Alignment:
| Q |
19 |
cacttgttagtcacctcttcgtcgtcgatatcagagaaactttctgattcatcttgagcttctgcagtggagtcatcatctctatgagagtcatcattat |
118 |
Q |
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| T |
33742313 |
cacttattagtcacctcttcgtcgtcgatatcagagaaactttctgattcatcttgagcttctgcagtggagtcatcatctctatgcgagtcatcattat |
33742214 |
T |
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| Q |
119 |
catcatctttagaggattcactctcaaaatcatcccctaaaagcacttttgagaaaagtaaaaattaatagctgtaaacagaggaaatctacattcccta |
218 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33742213 |
catcatctttagaggattcactctcaaaatcgtcccctaaaagcacttttgagaaaagtaagaattaatagctgtaaacagaggaaatctacattcccta |
33742114 |
T |
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| Q |
219 |
aagagaaaataagagcacgcggaaatactttctagcgcagcggcgaacaattctttttcctgtctct |
285 |
Q |
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| T |
33742113 |
aagagaaaataagagcacgcggaaatactttctagcgcagcggcgagcaattctttttcctgtctct |
33742047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 253
Target Start/End: Complemental strand, 33729669 - 33729564
Alignment:
| Q |
148 |
tcatcccctaaaagcacttttgagaaaagtaaaaattaatagctgtaaacagaggaaatctacattccctaaagaga-aaataagagcacgcggaaatac |
246 |
Q |
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||||||||| ||| || ||||||||||| | | |||||||||||| |||| |||||||||| | |||||| ||||| ||||||||||| |||| | ||| |
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| T |
33729669 |
tcatcccctgaaatcatttttgagaaaattgagaattaatagctgaaaactaaggaaatctaga-tccctagagagagaaataagagcaagcggcattac |
33729571 |
T |
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| Q |
247 |
tttctag |
253 |
Q |
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||||||| |
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| T |
33729570 |
tttctag |
33729564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 33729742 - 33729680
Alignment:
| Q |
18 |
acacttgttagtcacctcttcgtcgtcgatatcagagaaactttctgattcatcttgagcttc |
80 |
Q |
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|||||| ||| ||||||||| ||| || |||||||||||| || ||||||||||||||||||| |
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| T |
33729742 |
acacttattaatcacctcttggtcatcaatatcagagaaatttcctgattcatcttgagcttc |
33729680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 33619644 - 33619607
Alignment:
| Q |
20 |
acttgttagtcacctcttcgtcgtcgatatcagagaaa |
57 |
Q |
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| T |
33619644 |
acttgttagtcacctcttcgtcatcgatatcagagaaa |
33619607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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