View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_48 (Length: 261)
Name: NF9623_low_48
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 6552729 - 6552477
Alignment:
| Q |
1 |
aaatttgtaaccaaaattacctctttgattcctccataaacattcaatatatgttgaagttcagtatttgaaattgatgaatcatataaaaatacttcaa |
100 |
Q |
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| T |
6552729 |
aaatttgtaaccaaaattacctctttgattcctccataaacattcaatatatgttgaagttcagtatttgaaattgatgaatcatataaaaatacttcaa |
6552630 |
T |
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| Q |
101 |
gcgttccctgattaacaccatttctggaaggactatcctgagaaatttgtaagacagataggagttgttggtaaactctatacaaacattactttaaggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6552629 |
gcgttccctgattaacaccatttctggaaggactatcctgagaaatttgtaagacaaataggagttgttggtaaactctatacaaacattactttaaggg |
6552530 |
T |
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| Q |
201 |
ttaccttatgatgtatcagagtcttagcacacacagttcaatgtagtattatc |
253 |
Q |
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| T |
6552529 |
ttaccttatgatgtatcagagtcttagcacacacagttcaatgtagtattatc |
6552477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 49060161 - 49060354
Alignment:
| Q |
5 |
ttgtaaccaaaattacctctttgattcctccataaacattcaatatatgttgaagttcagtatttgaaattgatgaatcatataaaaatacttcaagcgt |
104 |
Q |
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||||||||||| ||||||||||||| |||||| |||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
49060161 |
ttgtaaccaaacttacctctttgatatctccatgaacattaaatatattgtgaatttcagtatttgaaattgatgaatcatataaaaatactgcaagtgt |
49060260 |
T |
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| Q |
105 |
tccctgattaacaccatttctggaaggactatcctgagaa-atttgtaagacagataggagttgttggtaaactctatacaaacattactttaa |
197 |
Q |
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|||||||| || || || |||||||||||||||||| || | ||||| |||| |||||||| | | ||||||||||||||||||| ||||| |
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| T |
49060261 |
gccctgattcactcctttcctggaaggactatcctgaaaatagttgtaggacaaataggagtcactagcaaactctatacaaacattagtttaa |
49060354 |
T |
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