View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9623_low_5 (Length: 599)
Name: NF9623_low_5
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_5 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0642 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0016 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 18 - 586
Target Start/End: Complemental strand, 51220 - 50650
Alignment:
| Q |
18 |
gatgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggtctaaaatgtcaagactg--g |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
51220 |
gatgatctttagtttaaa-gctaaagagatggaaaaaaatgtattcaacccaattagggggcgaagaagtgttaaagagtctaaaatgtcaagactgtgg |
51122 |
T |
|
| Q |
116 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcactt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51121 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcactt |
51022 |
T |
|
| Q |
216 |
ggattcctactgatagaaaattagtggaaaaaa-gatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagta |
314 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51021 |
ggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccaccgcaaagattcctaaaatgccatggatcatgattgaagattcaaagta |
50922 |
T |
|
| Q |
315 |
atcaaggagcattatttggtaatattagttatgctgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaatt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50921 |
atcaaggagcattatttggtaatattagttatgtcgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaatt |
50822 |
T |
|
| Q |
415 |
ttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50821 |
ttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctt |
50722 |
T |
|
| Q |
515 |
taattaagtatgttttgtttttaagcttgaatcttggatttcatattactttagagtaaaccatgtgaatct |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50721 |
taattaagtatgttttgtttttaagcttgaatcttggatttaatattactttagagtaaaccatgtgaatct |
50650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 18 - 586
Target Start/End: Original strand, 44498350 - 44498918
Alignment:
| Q |
18 |
gatgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggtctaaaatgtcaagactg--g |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
44498350 |
gatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaactagggggagaag---tgttaaagggtctaaaatgttaagactgtgg |
44498446 |
T |
|
| Q |
116 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcactt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498447 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcactt |
44498546 |
T |
|
| Q |
216 |
ggattcctactgatagaaaattagtggaaaa-aagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagta |
314 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44498547 |
ggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccaccgcaaagattcctaaaatgccatggatcatgattgaagattcaaagta |
44498646 |
T |
|
| Q |
315 |
atcaaggagcattatttggtaatattagttatgctgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaatt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498647 |
atcaaggagcattatttggtaatattagttatgtcgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaatt |
44498746 |
T |
|
| Q |
415 |
ttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498747 |
ttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctt |
44498846 |
T |
|
| Q |
515 |
taattaagtatgttttgtttttaagcttgaatcttggatttcatattactttagagtaaaccatgtgaatct |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44498847 |
taattaagtatgttttgtttttaagcttgaatcttggatttaatattactttagagtaaaccatgtgaatct |
44498918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Original strand, 6733 - 7291
Alignment:
| Q |
18 |
gatgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggtctaaaatgtcaagactg--g |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
6733 |
gatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaattagggggagaag---tgttaaagggtctaaaatgttaagactgtgg |
6829 |
T |
|
| Q |
116 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcactt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6830 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcaaaacttcagaagcactt |
6929 |
T |
|
| Q |
216 |
ggattcctactgatagaaaattagtggaaaa-aagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagta |
314 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6930 |
ggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagta |
7029 |
T |
|
| Q |
315 |
atcaaggagcattatttggtaatattagttatgctgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaatt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7030 |
atcaaggagcattatttggtaatattagttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaatt |
7129 |
T |
|
| Q |
415 |
ttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7130 |
ttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgg-------- |
7221 |
T |
|
| Q |
515 |
taattaagtatgttttgtttttaagcttgaatcttggatttcatattactttagagtaaaccatgtgaatctgtg |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
7222 |
-----aagtatgttttgtttttaagcttgaatcttggatttgatattactttagtgtaaaccatgtgaatctgtg |
7291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Original strand, 16646 - 17204
Alignment:
| Q |
18 |
gatgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggtctaaaatgtcaagactg--g |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
16646 |
gatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaattagggggagaag---tgttaaagggtctaaaatgttaagactgtgg |
16742 |
T |
|
| Q |
116 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcactt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16743 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcaaaacttcagaagcactt |
16842 |
T |
|
| Q |
216 |
ggattcctactgatagaaaattagtggaaaa-aagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagta |
314 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843 |
ggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagta |
16942 |
T |
|
| Q |
315 |
atcaaggagcattatttggtaatattagttatgctgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaatt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16943 |
atcaaggagcattatttggtaatattagttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaatt |
17042 |
T |
|
| Q |
415 |
ttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17043 |
ttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgg-------- |
17134 |
T |
|
| Q |
515 |
taattaagtatgttttgtttttaagcttgaatcttggatttcatattactttagagtaaaccatgtgaatctgtg |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
17135 |
-----aagtatgttttgtttttaagcttgaatcttggatttgatattactttagtgtaaaccatgtgaatctgtg |
17204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Complemental strand, 22336 - 21778
Alignment:
| Q |
18 |
gatgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggtctaaaatgtcaagactg--g |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
22336 |
gatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaattagggggagaag---tgttaaagggtctaaaatgttaagactgtgg |
22240 |
T |
|
| Q |
116 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcactt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22239 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcaaaacttcagaagcactt |
22140 |
T |
|
| Q |
216 |
ggattcctactgatagaaaattagtggaaaaaa-gatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagta |
314 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22139 |
ggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagta |
22040 |
T |
|
| Q |
315 |
atcaaggagcattatttggtaatattagttatgctgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaatt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22039 |
atcaaggagcattatttggtaatattagttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaatt |
21940 |
T |
|
| Q |
415 |
ttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21939 |
ttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgg-------- |
21848 |
T |
|
| Q |
515 |
taattaagtatgttttgtttttaagcttgaatcttggatttcatattactttagagtaaaccatgtgaatctgtg |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
21847 |
-----aagtatgttttgtttttaagcttgaatcttggatttgatattactttagtgtaaaccatgtgaatctgtg |
21778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Original strand, 3380953 - 3381510
Alignment:
| Q |
18 |
gatgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggtctaaaatgtcaagactg--g |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| | |
|
|
| T |
3380953 |
gatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaattagggg----agaagtgttaaagggactaaaatgtcaagactgtgg |
3381048 |
T |
|
| Q |
116 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcactt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3381049 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccaaacacatatcagaacttcagaagcactt |
3381148 |
T |
|
| Q |
216 |
ggattcctactgatagaaaattagtgg-aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagta |
314 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381149 |
ggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccacctc---gagtcctaaaatgccatggatcgtgattgaagattcaaagta |
3381245 |
T |
|
| Q |
315 |
atcaaggagcattatttggtaatattagttatgctgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaatt |
414 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3381246 |
atcaaggagcattgtttggtaatattagttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttg----------agttaaaatt |
3381335 |
T |
|
| Q |
415 |
ttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381336 |
ttccatttatggagttgtcatattttgtatgaaatatgtaagggctgggttaactattttagatacaaatttgtatttgcaccttttgctggattggctt |
3381435 |
T |
|
| Q |
515 |
taattaagtatgttttgtttttaagcttgaatcttggatttcatattactttagagtaaaccatgtgaatctgtg |
589 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3381436 |
taactaagtatgttttgtttttaagcttgaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
3381510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 15708889 - 15709118
Alignment:
| Q |
18 |
gatgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggtctaaaatgtcaagactg--g |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
15708889 |
gatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaattagggggagaag---tgttaaagggtctaaaatgttaagactgtgg |
15708985 |
T |
|
| Q |
116 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcactt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15708986 |
gaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcaaaacttcagaagcactt |
15709085 |
T |
|
| Q |
216 |
ggattcctactgatagaaaattagtggaaaaaa |
248 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
15709086 |
ggattcctgctgatagaaaattagtggaaaaaa |
15709118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 26795909 - 26795723
Alignment:
| Q |
16 |
aagatgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggtctaaaatgtcaagactg- |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| | ||| ||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26795909 |
aagatgatctttagttaaaaagctaaagggatggaaa-agatgcattcaacacaattaggggaagaagaagtgttaaagggtccaaaatgtcaagactgt |
26795811 |
T |
|
| Q |
115 |
-ggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaactgccatacacatatcagaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26795810 |
gggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaaggttttaactgccatacacatatcagaa |
26795723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 471 - 548
Target Start/End: Complemental strand, 9200166 - 9200091
Alignment:
| Q |
471 |
ttttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagcttgaatct |
548 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9200166 |
ttttggatccaaatttgtatt-gcaacttttt-tggattggctttagttaagtatgttttgtttttaagcttgaatct |
9200091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 548
Target Start/End: Complemental strand, 9201928 - 9201854
Alignment:
| Q |
471 |
ttttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagcttgaatct |
548 |
Q |
| |
|
|||||||| |||||||||||| ||| |||| ||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
9201928 |
ttttggatccaaatttgtatt-gcaattttt--tggattggctttagttaagtaggttttgtttttaagcttgaatct |
9201854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 2303461 - 2303543
Alignment:
| Q |
257 |
atgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatat |
339 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||| ||||||||||||||||| || | ||||||| |||||| ||||| |
|
|
| T |
2303461 |
atgcatccactactaagagtcctaaaatgccatttatcaagattgaagattcaaagtgattatggagcatgatttggcaatat |
2303543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 4e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 353 - 518
Target Start/End: Complemental strand, 30112048 - 30111884
Alignment:
| Q |
353 |
atgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatg |
452 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||| |||||||||||||||| | |||||||||||||||||||| ||| |
|
|
| T |
30112048 |
atgtctttagtgaaatcattttggctatctaatgttttgttcaccctttcgtagttgaaattttccatttatg-atttgtcatattttgtgtgaataatg |
30111950 |
T |
|
| Q |
453 |
taagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctttaat |
518 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
30111949 |
taagggctgagttaactattttggatacaaatttgtatttgtaacttttgctggattggctttaat |
30111884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 30112170 - 30112059
Alignment:
| Q |
204 |
tcagaagcacttggattcctactgatagaaaattagtggaaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaa |
303 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| |||| ||| ||||||| |
|
|
| T |
30112170 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaagatctaaaatgcatccactccaaagagttctaaaatgtcatgcatcaagattgaa |
30112071 |
T |
|
| Q |
304 |
gattcaaagtaa |
315 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30112070 |
gattcaaagtaa |
30112059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 528 - 584
Target Start/End: Complemental strand, 30110775 - 30110718
Alignment:
| Q |
528 |
tttgtttttaagcttgaatcttggatttcatatt-actttagagtaaaccatgtgaat |
584 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
30110775 |
tttgtttttaagcttatatcttggatttgatattcactttagagtaaaccatgtgaat |
30110718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University