View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_57 (Length: 250)
Name: NF9623_low_57
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42889583 - 42889353
Alignment:
| Q |
1 |
aaattgacactttattgatatttggttttgtttgagcagtccaaatttgaaactatagtatagtgtttctaagagggtaggtggattattctcagttcta |
100 |
Q |
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| T |
42889583 |
aaattgacactttattgatatttggttttgtttgagcagtccaaatttgaaactgtagtatagtgtttctaagagggtaggtggattattctcatttcta |
42889484 |
T |
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| Q |
101 |
ccaccatatgatttcagtattttattgaataatacataaagtataaggttggtgagttgctggcggcatatatagtccaacgatgtctagtaatacatct |
200 |
Q |
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| T |
42889483 |
ccaccatataatt-------------gaataatacataaagtataaggttggtgagttgctggcggcatatatagtccaacgatgtctagtaatacatct |
42889397 |
T |
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| Q |
201 |
ttgaccg---tttttgttttgtttattacaaattgcagaataat |
241 |
Q |
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| T |
42889396 |
ttgaccgttatttttgttttgtttattacaaattgcagaataat |
42889353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 42884870 - 42884977
Alignment:
| Q |
12 |
ttattgatatttggttttgtttgagcagtccaaatttgaaactatagtatagtgtttctaagagggtaggtggattattctcagttctaccaccatatga |
111 |
Q |
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|||||| |||||| ||||||||||| | ||||| |||||| | ||||||||||||||| |||||||||| |||| |||| |||||||||||| | | |
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| T |
42884870 |
ttattgctatttgtttttgtttgagtaatccaattttgaacc-----tatagtgtttctaagggggtaggtgggttatgctcatttctaccaccatttta |
42884964 |
T |
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| Q |
112 |
tttcagtatttta |
124 |
Q |
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| T |
42884965 |
tttccttatttta |
42884977 |
T |
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