View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_65 (Length: 240)
Name: NF9623_low_65
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 44109453 - 44109651
Alignment:
| Q |
1 |
gtttctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcgaacgctttgaaggtatgtattatcttttatctga |
100 |
Q |
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| T |
44109453 |
gtttctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcaaacgctttgaaggtatgtattatcttttatctga |
44109552 |
T |
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| Q |
101 |
tcatcatcatttatctttttaaatattgtgtataatataatgcgtattgatgcgcaatgttgcctttagttgtgtttcccatgcaaatctatttctgtt |
199 |
Q |
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| T |
44109553 |
tcatcatcatttatctttttaaatattgtgtataatataatgtgtattgatgcgcaatgttgcctttagttgtgtttcccatgcaaatctatttctgtt |
44109651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 40450897 - 40450765
Alignment:
| Q |
4 |
tctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcgaacgctttgaaggtatgtattatcttttatctgatca |
103 |
Q |
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| T |
40450897 |
tctccttattcggttgtgctactgagtggacttgcaagtgtcaagtctcttacactatcaaaggacacttttagggtatgtattaccttttctctcatca |
40450798 |
T |
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| Q |
104 |
tcatcattt-atctttttaaatattgtgtataa |
135 |
Q |
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| T |
40450797 |
tcttcatttaatctttttaaatattgtgtataa |
40450765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 40276437 - 40276557
Alignment:
| Q |
78 |
ggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatata-----atgcgtattgatgcgcaatgttgcctttagttg |
172 |
Q |
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| T |
40276437 |
ggtatgtattgtcttttttctgaacatcttcatttatctttttaaatattgtgtataatataataagatgcgtattgacgcacaatgttgcctttggctg |
40276536 |
T |
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| Q |
173 |
tgtttcccatgcaaatctatt |
193 |
Q |
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| T |
40276537 |
tgtttcccatgcaagtctatt |
40276557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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