View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_7 (Length: 597)
Name: NF9623_low_7
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 17 - 587
Target Start/End: Complemental strand, 32534708 - 32534138
Alignment:
| Q |
17 |
aaaactgaatagcatcccagaaatttactgatatgaatgcgaactgagttttggtgacaaattgtatcaagctaggaagcatgtgcaggacatgtctaga |
116 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
32534708 |
aaaactgaatagcatcccagaaatttagtgatatgaatgcgaactgagttttggtgacaaattgtatcaagctaggaagcatgtgtaggacatgtataga |
32534609 |
T |
|
| Q |
117 |
ataacaagagctcattgacatgtgatgaccaattgtagattctacaagacatgatgggctaagatacaacgtgcaaacttaatataatgctaaaataaaa |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32534608 |
ataacaagaggtcattgacatgtgatgaccaattgtagattctacaagacatgatgggctaagatacaacgtgcaaacttaatataatgctaacataaaa |
32534509 |
T |
|
| Q |
217 |
atacaaattctaaattatactactaaagacatcattgtttctcaagtcagcattagtcattataaaatactacagtatttttatcaaacaattgtgctat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32534508 |
atacaaattctaaattatactactaaagacatcattgtttcttaagtcagcattagtcattatataatactacagtatttttatcaaacaattgtgctat |
32534409 |
T |
|
| Q |
317 |
cccagtactattgatactgaaattcaagcatgattgaattgtgtaggttagaaggatccaatataatatttgctagctattttggagtgtctaggctgtt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32534408 |
cccagtactattgatactgaaattcaagcatgattgaattgtgtaggttagaaggatccaatataatatttgctagctgttttggagtgtctaggctgtt |
32534309 |
T |
|
| Q |
417 |
agtcatgcccttatttgcgagggttactagtccctgttggttaatgaatgttaactcaagcctttagacttcatttctcaccacgcgcctgcttttactt |
516 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
32534308 |
agtcatgcccttatttgtgagggttactagtccctgttggttaatgaatgttaactcaagcctttagacttcatttctcaccacgcgcttgctcttactt |
32534209 |
T |
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| Q |
517 |
ctgtgagggtcatctcgtgcattagttgttactatctctgtagctaggatcacaggcttctacgtcctttg |
587 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32534208 |
ctgtgagggtcatctcgtgcattagttgttactatctctgtagctaggatcacaggcttctacgtcctttg |
32534138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 403 - 492
Target Start/End: Complemental strand, 32549534 - 32549445
Alignment:
| Q |
403 |
gtgtctaggctgttagtcatgcccttatttgcgagggttactagtccctgttggttaatgaatgttaactcaagcctttagacttcattt |
492 |
Q |
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| T |
32549534 |
gtgtctaggctgttagtagtgccctttattgtgacgctcatttgtccttgttggctaatgaatgttaactcaagtctttagatttcattt |
32549445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 32549995 - 32549959
Alignment:
| Q |
58 |
aactgagttttggtgacaaattgtatcaagctaggaa |
94 |
Q |
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| T |
32549995 |
aactgagttttggagacaaattgtatcaagctaggaa |
32549959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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