View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_75 (Length: 231)
Name: NF9623_low_75
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_75 |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 18621969 - 18622075
Alignment:
| Q |
104 |
tcctttgaggatctctgcagggtcatgaaggaaatcttgggagataaagtggagaaggtagttgtctctgacaggattgttgattctccatgctgtttgg |
203 |
Q |
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| T |
18621969 |
tcctttgaggatctctgcagggtcatgaaggagatcttgggagataaagtggagaaggtagttgtctctgacaggattgttgattctccatgctgtttgg |
18622068 |
T |
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| Q |
204 |
tgaccgg |
210 |
Q |
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| T |
18622069 |
tgaccgg |
18622075 |
T |
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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 18621867 - 18621901
Alignment:
| Q |
2 |
aaagagtacgacggaaagaaattggtttcagctac |
36 |
Q |
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| T |
18621867 |
aaagagtacgacggaaagaaattggtttcagctac |
18621901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 45060860 - 45060790
Alignment:
| Q |
143 |
ggagataaagtggagaaggtagttgtctctgacaggattgttgattctccatgctgtttggtgaccggtga |
213 |
Q |
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| T |
45060860 |
ggagacaaagttgaaaaggtagttgtctctgataggattgtggattctccatgctgtttggtgactggtga |
45060790 |
T |
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