View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9623_low_76 (Length: 228)
Name: NF9623_low_76
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_76 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 12946331 - 12946137
Alignment:
| Q |
17 |
acatacaagactggaggtgttgattataagtgtgtaagaacttctgcctttaaaga-gggagtcgatttcaagcaatctgtgattatttagtgaaacaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12946331 |
acatacaagactggaggtgttgattataagtgtgtaagaacttctgcctttaaagaagggagtcgatttcaagcaatctgtgattatttagtgaaacaaa |
12946232 |
T |
|
| Q |
116 |
tagagtgtcgctttcatagagtggaagatggagtgtccttgtttctgtactatattgaagtttgaaattctctttatttgttatttttgtacctc |
210 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
12946231 |
tagagtgccgctttcatagagtggaagatggagtgtccttgtttctgtactatattgaagtttgaaattctcattatttgttgtttttgtacctc |
12946137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 12932121 - 12931915
Alignment:
| Q |
17 |
acatacaagactggaggtgttgattataagtgtgtaagaacttctgcctttaaag-agggagtcgatttcaagcaatctgtgattatttagtgaaacaa- |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932121 |
acatacaagactggaggtgttgattataagtgtgtaagaacttctgcctttaaagaagggagtcgatttcaagcaatctgtgattatttagtgaaacaaa |
12932022 |
T |
|
| Q |
115 |
-----------atagagtgtcgctttcatagagtggaagatggagtgtccttgtttctgtactatattgaagtttgaaattctctttatttgttattttt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
12932021 |
tagagtggaagatagagtgtcgctttcatagagtggaagatggagtgtccttgtttctgtactatattgaagtttgaaattctcattatttgttgttttt |
12931922 |
T |
|
| Q |
204 |
gtacctc |
210 |
Q |
| |
|
||||||| |
|
|
| T |
12931921 |
gtacctc |
12931915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University