View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9623_low_83 (Length: 218)
Name: NF9623_low_83
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_83 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 38118326 - 38118535
Alignment:
| Q |
1 |
agttggagatttggtcagtctttcatcagcaaggttcagttccgattgaaagaatactcatagatatgatttagaagggaaaagataagattattagtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38118326 |
agttggagatttggtcagtctttcatcagcaaggttcagttccgattgaaagaatactcatagatatgatttagaagggaaaagataagattattagtga |
38118425 |
T |
|
| Q |
101 |
atctctaaattgatcttcaaagtgtaaggatcggacaatttactcctcaaaattacgaagtatgtattttggccctttaattttaagaacatcaattaat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38118426 |
atctctaatttgatcttcaaagtgtaaggatcggacaatttagtcctcaaaattacgaagtatgtattttggccctttaattttaacaacatcaattaat |
38118525 |
T |
|
| Q |
201 |
tgtctctgct |
210 |
Q |
| |
|
||||| |||| |
|
|
| T |
38118526 |
tgtctgtgct |
38118535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 38165962 - 38166028
Alignment:
| Q |
1 |
agttggagatttggtcagtctttcatcagcaaggttcagttccgattgaaagaatactcatagatat |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| |
|
|
| T |
38165962 |
agttggagatttggtcagtctttcatcagcaaggttcagttctgattgaaaggatactcataaatat |
38166028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University