View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9624_high_3 (Length: 420)
Name: NF9624_high_3
Description: NF9624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9624_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 43409213 - 43408802
Alignment:
| Q |
1 |
cgtgtaagccaaacatgttggcatggtgagcaagtggatattcagatttgctgaaggcagtaatatcaatagcaaaacaaggtttggttgttgtgaaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409213 |
cgtgtaagccaaacatgttggcatggtgagcaagtggatattcagatttgctgaaggcagtaatatcaatagcaaaacaaggtttggttgttgtgaaggc |
43409114 |
T |
|
| Q |
101 |
tgttcctactattccttgtccattaaaaaggtgatactcactgcacgcttcttggaatcccaatacatccatgtcaccaacataacaagctgaatcaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409113 |
tgttcctactattccttgtccattaaaaaggtgatactcactgcacgcttcttggaatcccaatacatccatgtcaccaacataacaagctgaatcaacc |
43409014 |
T |
|
| Q |
201 |
gttgatatgcagcaactcatagttgaaacaccacaacctgatgcaccactacttccctttcctcctccttgttgttgttgtaggcaaggagcccatgtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409013 |
gttgatatgcagcaactcatagttgaaacaccacaacctgatgcaccactacttccctttcctcctccttgttgttgttgtaggcaaggagcccatgtta |
43408914 |
T |
|
| Q |
301 |
gtgctaatggtaaattgtgcgtcttgcccactgaagccaacacttccattatctcgttcacggctgcttcatatagctcttcaaatacctaattattcat |
400 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43408913 |
gtgctaatggtaaattgtgcgtcttgcacactgacgccaacacttccattatctcgttcaccgctgcttcatatagctcttcaaatacctaattattcat |
43408814 |
T |
|
| Q |
401 |
catcatctcatt |
412 |
Q |
| |
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||||| ||||| |
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| T |
43408813 |
tatcatatcatt |
43408802 |
T |
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