View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9624_high_4 (Length: 407)
Name: NF9624_high_4
Description: NF9624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9624_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 404
Target Start/End: Complemental strand, 43868702 - 43868318
Alignment:
| Q |
20 |
gcctgctccattcagtaataacctcttcatagtttagtctcaaaaatctctctctctttgtttcttctttagtaataacactctcactataaccaacact |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43868702 |
gcctgctccattcagtaataacctcttcatagtttagtctcaaaaatctctctctctttgtttcttctttagtaataacgctctcactataaccaacact |
43868603 |
T |
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| Q |
120 |
actattactcaaaggcatatactctttctcttgttgtgctagtgatacatcattattatcaatattccaatgaaaaacatcatcacttgtcatgtcaaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868602 |
actattactcaaaggcatatactctttctcttgttgtgctagtgatacatcattattatcaatattccaatgaaaaacatcatcacttgtcatgtcaaaa |
43868503 |
T |
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| Q |
220 |
actgattccaaatcatcaagttcttcatccttaacctttaacatttcatttttggatgcatccatttcattctcttgtttataatcaaacacttgtcctg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868502 |
actgattccaaatcatcaagttcttcatccttaacctttaacatttcacttttggatgcatccatttcattctcttgtttataatcaaacacttgtcctg |
43868403 |
T |
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| Q |
320 |
atgaattctcttgaatctcactactcccaacaccaagtaaactttcaacattagctgcaaattcagcaagatcaacaccaaactc |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43868402 |
atgaattctcttgaatctcactactcccaacaccaagtaaactttcaacattagctgcaaattcagcaagatcaacatcaaactc |
43868318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 21188367 - 21188411
Alignment:
| Q |
20 |
gcctgctccattcagtaataacctcttcatagtttagtctcaaaa |
64 |
Q |
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| T |
21188367 |
gcctgctccattcagtaataacctcttcatagtttagtctcaaaa |
21188411 |
T |
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