View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9624_high_7 (Length: 267)

Name: NF9624_high_7
Description: NF9624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9624_high_7
NF9624_high_7
[»] chr1 (2 HSPs)
chr1 (28-267)||(34907689-34907928)
chr1 (38-267)||(34894137-34894363)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 28 - 267
Target Start/End: Original strand, 34907689 - 34907928
Alignment:
Q  28 caaaggaacttaaaaatgggcaaagtactgaacaaagtaacatacaaatatgctaagtttaatcacaaaatcataaatatatacatacaagtaaatcaat 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907689 caaaggaacttaaaaatgggcaaagtactgaacaaagtaacatacaaatatgctaagtttaatcacaaaatcataaatatatacatacaagtaaatcaat 34907788  T
Q  128 cattaggaagtatctccaattatgctgagttcacatatcattaacaccaataattcaaagaaggtgaaaagtgcagatctaatcatattgtgctctaggc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34907789 cattaggaagtatctccaattatgctgagttcacatatcattaacaccaataattcaaagaaggtgaaacgtgcagatctaatcatattgtgctctaggc 34907888  T
Q  228 cagatctacaggtgagatagactaatcaagttgagacatc 267  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  34907889 cagatctacaggtgagatagactaatcaagttgaaacatc 34907928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 38 - 267
Target Start/End: Original strand, 34894137 - 34894363
Alignment:
Q  38 taaaaatgggcaaagtactgaacaaagtaacatacaaatatgctaagtttaatcacaaaatcataaatatatacatacaagtaaatcaatcattaggaag 137  Q
    |||| |||| ||| |||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||  ||| ||| |||| ||| | |||||||||    
T  34894137 taaacatggacaacgtactgaacaaaataacatacaaagatgccaagtttaatcacaaaatcataaatattcacacacaggtaattcatttattaggaag 34894236  T
Q  138 tatctccaattatgctgagttcacatatcattaacaccaataattcaaagaaggtgaaaagtgcagatctaatcatattgtgctctaggccagatctaca 237  Q
    | |||||  ||||||||| ||    |  |||||||||||||||||||||||||||||||  |||||||| |  ||||| || |||||  |||| ||||||    
T  34894237 tctctccgtttatgctgactt----ttccattaacaccaataattcaaagaaggtgaaacatgcagatcaacacatatagttctctacaccaggtctaca 34894332  T
Q  238 gg-tgagatagactaatcaagttgagacatc 267  Q
    || | |||||| |||||||||||||||||||    
T  34894333 ggtttagatagcctaatcaagttgagacatc 34894363  T

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