View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9624_high_8 (Length: 236)
Name: NF9624_high_8
Description: NF9624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9624_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 37662482 - 37662691
Alignment:
| Q |
20 |
attcgttcaccaacttgtccttcattcaagacaaattcaacatatgaagttggtgatttcaagaactttgttgaatggaacaaggttgttcagttacttg |
119 |
Q |
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| T |
37662482 |
attcgttcaccaacttgtccttcattcaaaaccaattcaacatatgaagttggtgatttcaagaactttgttgaatggaacaaggttgttcagttacttg |
37662581 |
T |
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| Q |
120 |
gttcaaaagggtattcttcattttcaactgcattgcattctgttcttgaagggattctgaaagattcatcaagttttggttatggttctgctacaatctc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37662582 |
gttcaaaagggtattcttcattttcaactgcattgcattctgttctcgaagggattctgaaagattcatcaagttttggttatggttctgctacaatctt |
37662681 |
T |
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| Q |
220 |
tgctcctcct |
229 |
Q |
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|||||||||| |
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| T |
37662682 |
tgctcctcct |
37662691 |
T |
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