View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9624_low_14 (Length: 267)
Name: NF9624_low_14
Description: NF9624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9624_low_14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 28 - 267
Target Start/End: Original strand, 34907689 - 34907928
Alignment:
| Q |
28 |
caaaggaacttaaaaatgggcaaagtactgaacaaagtaacatacaaatatgctaagtttaatcacaaaatcataaatatatacatacaagtaaatcaat |
127 |
Q |
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| T |
34907689 |
caaaggaacttaaaaatgggcaaagtactgaacaaagtaacatacaaatatgctaagtttaatcacaaaatcataaatatatacatacaagtaaatcaat |
34907788 |
T |
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| Q |
128 |
cattaggaagtatctccaattatgctgagttcacatatcattaacaccaataattcaaagaaggtgaaaagtgcagatctaatcatattgtgctctaggc |
227 |
Q |
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| T |
34907789 |
cattaggaagtatctccaattatgctgagttcacatatcattaacaccaataattcaaagaaggtgaaacgtgcagatctaatcatattgtgctctaggc |
34907888 |
T |
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| Q |
228 |
cagatctacaggtgagatagactaatcaagttgagacatc |
267 |
Q |
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| T |
34907889 |
cagatctacaggtgagatagactaatcaagttgaaacatc |
34907928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 38 - 267
Target Start/End: Original strand, 34894137 - 34894363
Alignment:
| Q |
38 |
taaaaatgggcaaagtactgaacaaagtaacatacaaatatgctaagtttaatcacaaaatcataaatatatacatacaagtaaatcaatcattaggaag |
137 |
Q |
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| T |
34894137 |
taaacatggacaacgtactgaacaaaataacatacaaagatgccaagtttaatcacaaaatcataaatattcacacacaggtaattcatttattaggaag |
34894236 |
T |
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| Q |
138 |
tatctccaattatgctgagttcacatatcattaacaccaataattcaaagaaggtgaaaagtgcagatctaatcatattgtgctctaggccagatctaca |
237 |
Q |
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| T |
34894237 |
tctctccgtttatgctgactt----ttccattaacaccaataattcaaagaaggtgaaacatgcagatcaacacatatagttctctacaccaggtctaca |
34894332 |
T |
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| Q |
238 |
gg-tgagatagactaatcaagttgagacatc |
267 |
Q |
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| T |
34894333 |
ggtttagatagcctaatcaagttgagacatc |
34894363 |
T |
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