View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9624_low_3 (Length: 457)

Name: NF9624_low_3
Description: NF9624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9624_low_3
NF9624_low_3
[»] chr7 (1 HSPs)
chr7 (7-283)||(45938314-45938586)
[»] chr8 (2 HSPs)
chr8 (340-422)||(16570859-16570941)
chr8 (345-449)||(3767626-3767730)
[»] chr4 (1 HSPs)
chr4 (335-449)||(53393125-53393239)
[»] chr6 (2 HSPs)
chr6 (340-405)||(26186695-26186760)
chr6 (335-429)||(9826839-9826933)
[»] chr2 (2 HSPs)
chr2 (335-423)||(29109158-29109246)
chr2 (333-421)||(5526316-5526404)
[»] chr3 (4 HSPs)
chr3 (345-422)||(44471129-44471206)
chr3 (346-449)||(11503296-11503399)
chr3 (345-406)||(30554552-30554613)
chr3 (358-421)||(779495-779559)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 45938586 - 45938314
Alignment:
Q  7 atatgaccaccaaccaactaggccacccacgaactaaaaagtatggatgcattttgaatggatggatatttacatcaacaatcacttaagaaggttagac 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||    
T  45938586 atatgaccaccaaccaactaggccacccacgaactaaaaagtatggatgcattttgaatggat----atttacatcaacaatcacttaagaaggttagac 45938491  T
Q  107 atctctttggtgtagtgccgtttggtctgtttggttattgcggaattggataattttcttacaagttatttgaatttcgaaccctaaacattatttcatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45938490 atctctttggtgtagtgccgtttggtctgtttggttattgcggaattggataattttcttacaagttatttgaatttcgaaccctaaacattaattcatt 45938391  T
Q  207 taatcccttagctcaattaaatgagttatacatccctcctatattgtgccggtctaaatgttcaaataaagataact 283  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45938390 taatcccttagctcaattaagtgagttatacatccctcctatattgtgccggtctaaatgttcaaataaagataact 45938314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 422
Target Start/End: Complemental strand, 16570941 - 16570859
Alignment:
Q  340 caacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaac 422  Q
    |||| ||||||| ||| |||||||| |||||||| ||||| ||||| | ||||||||||| |||||||| |||||||||||||    
T  16570941 caacctaaaccgatctaatttggttaggttctcgatttttaattttgagatccaaagaaccgatgaactgaaccgatgctaac 16570859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 449
Target Start/End: Complemental strand, 3767730 - 3767626
Alignment:
Q  345 taaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactagta 444  Q
    ||||||| |||  |||||||||||||||| ||||| ||||| | |||||| |||| |||||||  |||||||||||||| ||||   ||||||| || ||    
T  3767730 taaaccgatctagtttggtttggttctcggttttttattttgagatccaatgaaccgatgaaccgaaccgatgctaacctcactccccattttagtaata 3767631  T
Q  445 ttatc 449  Q
    |||||    
T  3767630 ttatc 3767626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 449
Target Start/End: Complemental strand, 53393239 - 53393125
Alignment:
Q  335 cgaagcaacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcat 434  Q
    |||| |||| ||||||| |||  ||||||| |||||||| ||| | | ||| |||||||| |||| |||||||  |||||||||||||| |||||| |||    
T  53393239 cgaaccaacctaaaccgatctagtttggttcggttctcggtttataactttgaaatccaatgaaccgatgaaccgaaccgatgctaacctcactttccat 53393140  T
Q  435 tttactagtattatc 449  Q
    |||| || |||||||    
T  53393139 tttagtaatattatc 53393125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 26186760 - 26186695
Alignment:
Q  340 caacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatga 405  Q
    |||||||||||| |||  |||||||||||||||| ||||| ||||| ||||||||||||| |||||    
T  26186760 caacttaaaccgatctagtttggtttggttctcggtttttaattttaaaatccaaagaaccgatga 26186695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 9826839 - 9826933
Alignment:
Q  335 cgaagcaacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccactt 429  Q
    |||| |||| ||||||| |||  ||||||| | |||||| ||||| ||||| ||||||||||||| |||||||  ||| |||| ||||| |||||    
T  9826839 cgaaccaacataaaccgatctagtttggttcgattctcggtttttaattttgaaatccaaagaaccgatgaaccaaactgatgttaacctcactt 9826933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 423
Target Start/End: Complemental strand, 29109246 - 29109158
Alignment:
Q  335 cgaagcaacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaacc 423  Q
    ||||||||| ||||||  |||  |||||||||||||||| ||||| ||||| | ||||||||||| |||||||  || |||||||||||    
T  29109246 cgaagcaacctaaaccaatctagtttggtttggttctcggtttttaattttgagatccaaagaaccgatgaaccaaatcgatgctaacc 29109158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 5526316 - 5526404
Alignment:
Q  333 aacgaagcaacttaaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaa 421  Q
    |||||| |||| ||||||| |||  ||||||| |||||||  ||||| ||||| | ||||||||||| |||||||  ||||||||||||    
T  5526316 aacgaaccaacctaaaccgatctagtttggttcggttctcagtttttaattttgagatccaaagaacagatgaaccgaaccgatgctaa 5526404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 422
Target Start/End: Original strand, 44471129 - 44471206
Alignment:
Q  345 taaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaac 422  Q
    ||||||| |||  ||||||| |||||| | ||||| ||||| ||||||||||||| |||||||  |||||||||||||    
T  44471129 taaaccgatctagtttggttcggttcttggtttttaattttgaaatccaaagaaccgatgaaccgaaccgatgctaac 44471206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 11503399 - 11503296
Alignment:
Q  346 aaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaactcaaccgatgctaaccccacttttcattttactagtat 445  Q
    |||||| ||| ||||||||||||||||| ||||| ||||| | ||||||  ||| ||| |||  |||| ||||||||| ||||   |||||||||| |||    
T  11503399 aaaccgatcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaaccgaacccatgctaacctcactccccattttactattat 11503300  T
Q  446 tatc 449  Q
    ||||    
T  11503299 tatc 11503296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 30554613 - 30554552
Alignment:
Q  345 taaaccgttctgatttggtttggttctcgctttttgatttttaaatccaaagaactgatgaa 406  Q
    ||||||| |||  ||||||| |||||||| ||||| ||||| | ||||||||||||||||||    
T  30554613 taaaccgatctagtttggttcggttctcgatttttaattttgatatccaaagaactgatgaa 30554552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 421
Target Start/End: Complemental strand, 779559 - 779495
Alignment:
Q  358 tttggtttggttctcgctttttgattttt-aaatccaaagaactgatgaactcaaccgatgctaa 421  Q
    ||||||| |||||| | ||||| |||||| ||||||||||||| |||||||  ||||||||||||    
T  779559 tttggttcggttcttggtttttaatttttgaaatccaaagaaccgatgaaccgaaccgatgctaa 779495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University