View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9624_low_9 (Length: 285)

Name: NF9624_low_9
Description: NF9624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9624_low_9
NF9624_low_9
[»] chr6 (2 HSPs)
chr6 (171-249)||(4159950-4160026)
chr6 (92-166)||(3077346-3077418)
[»] chr4 (1 HSPs)
chr4 (17-87)||(44301503-44301572)


Alignment Details
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 4160026 - 4159950
Alignment:
Q  171 atcttcaaaaccaataccatttatggtctctcatttaattgggcatatgttgctgttatcggacatgaaaagcttgcat 249  Q
    ||||||||||||||| ||||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  4160026 atcttcaaaaccaatgccatttatggtctc--atttaattggacatatgttgctgttatcggtcatgaaaagcttgcat 4159950  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 3077346 - 3077418
Alignment:
Q  92 tattcattttcttatatctatacaatggaagcagaagggcttcttacttatttatgtctaagaatcactaatgat 166  Q
    |||||||||||||||||||||||||||||||   ||||| ||||||||||| ||  |||||||||||||||||||    
T  3077346 tattcattttcttatatctatacaatggaag--aaaggggttcttacttatctacttctaagaatcactaatgat 3077418  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 44301503 - 44301572
Alignment:
Q  17 agaactcactcttggacaaggaaatgtgaaacacaatttccaaaccaacaatctgttcaaatccaattcct 87  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||    
T  44301503 agaactcactcttggacaaggaaatgtgaaacacaattttcaaaccaacagtctattc-aatccaattcct 44301572  T

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