View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9625_high_5 (Length: 341)
Name: NF9625_high_5
Description: NF9625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9625_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 35741483 - 35741303
Alignment:
| Q |
18 |
gttaaggacacttacttttatagtttgtcctggttcaaagagtttagatgcacatagaatttcacaagacttgttacggatggaacgagcgtcacaaaga |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35741483 |
gttaaggactcttacttttatagtttgtcctggttcaaagagtttagatgcacatagaatttcacaagacttgttacggatggaacgagcgtcacaaaga |
35741384 |
T |
|
| Q |
118 |
gcacatgttgagttccttcttactgatgaattagagaatgtgggtatttgaagatgtggtgaaagtgaagtgaatgtattg |
198 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35741383 |
gcacatgttgagtttcttcttactgatgaattagagaatgtgggtatttgaagatgtggtgaaagtgaagtgaatgtattg |
35741303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 35741297 - 35741220
Alignment:
| Q |
254 |
ctgtttgtttggtattatgtggccattgtttgtaatagtttgtgagttgggaattagtgtactcgtttactttctctg |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35741297 |
ctgtttgtttggtattatgtggccattgtttgtaatagtttgtgaattgggaattagtgtactcgtttactttctctg |
35741220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 35747857 - 35747793
Alignment:
| Q |
73 |
agaatttcacaagacttgttacggatggaacgagcgtcacaaagagcacatgttgagttccttct |
137 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
35747857 |
agaatttcacaagacttgttaaggatggaacgagcatcacaaagagcacatgttgaattccttct |
35747793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 10863685 - 10863745
Alignment:
| Q |
76 |
atttcacaagacttgttacggatggaacgagcgtcacaaagagcacatgttgagttccttc |
136 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| |||||||||||||| ||||| ||||||| |
|
|
| T |
10863685 |
atttcacaagacttgttaaggatggaaagagcatcacaaagagcacaagttgaattccttc |
10863745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 10904732 - 10904774
Alignment:
| Q |
76 |
atttcacaagacttgttacggatggaacgagcgtcacaaagag |
118 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
10904732 |
atttcacaagacttgttaaggatggaaagagcatcacaaagag |
10904774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University