View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9625_low_1 (Length: 638)
Name: NF9625_low_1
Description: NF9625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9625_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 7459389 - 7459098
Alignment:
| Q |
1 |
tatagataatgcattcataaaacatgtccaattaaaagagattttctttctaacaatcatctcaaacattccatatcaagtgaaatatcttaaacttaat |
100 |
Q |
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| T |
7459389 |
tatagataatgcattcataaaacatgtccaattaaaagagattttctttctaacaatcatctcaaacattccatatcaagtgaaatatcttaaacttaa- |
7459291 |
T |
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| Q |
101 |
cgataaggttgaaaggataatcgatcactgtgaactatctttgctttttatgaagtttatggtacaaaaggcgacaatagaatcaatttcaaaatagtta |
200 |
Q |
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| T |
7459290 |
--------------------tcgatcactattaactatctttgctttttatgaagcttatggtacaaaaggcgacaatagaatcaatttcaaaatagtta |
7459211 |
T |
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| Q |
201 |
aaaatcaagaaagatgaaccaacatccatcaagaaatattccaaaaggattcgccacctaccttgtccattgcatcctcgagctctgccttctcggatgg |
300 |
Q |
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| T |
7459210 |
aaaatcaagaaagatgaaccaacatccatcaagaaatattccaaaaggattcgccacctaccttgtccattgcatcctcgagctctgccttctcggatgg |
7459111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 308 - 529
Target Start/End: Complemental strand, 7450543 - 7450322
Alignment:
| Q |
308 |
gattttcccatttcgaggccaaccttcaaggnnnnnnnttatcacgttcatattcaagaagtgtaactcgacctgagagagcctacctcacactcgatgt |
407 |
Q |
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| T |
7450543 |
gattttcccatttcgaggccaaccttcaaggaaaaaaattatcacgttgatattcaagaagtgtaactcaacctgagagagcctacctcacactcgatgt |
7450444 |
T |
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| Q |
408 |
cggaatcttctccacctccccgatgtctttccttacaacctcaacctcaacaaccttctaagaaatgtcattttcaatttccttgacccacatctctaag |
507 |
Q |
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| T |
7450443 |
cggaatctgctccacctccccaatgtctttccttacaacctcagcctcaacaatgttctaagaaatgtcattttcaatttccttgacccacatctctaag |
7450344 |
T |
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| Q |
508 |
gatgccactttggcagaaagag |
529 |
Q |
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||| |||||||||||||||||| |
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| T |
7450343 |
gataccactttggcagaaagag |
7450322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 308 - 529
Target Start/End: Complemental strand, 7458685 - 7458464
Alignment:
| Q |
308 |
gattttcccatttcgaggccaaccttcaaggnnnnnnnttatcacgttcatattcaagaagtgtaactcgacctgagagagcctacctcacactcgatgt |
407 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7458685 |
gattttcccatttcgaggccaaccttcaaggaaaaaaattatcacgttgatattcaagaagtgtaactcaacctgagagagcctacctcacactcgatgt |
7458586 |
T |
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| Q |
408 |
cggaatcttctccacctccccgatgtctttccttacaacctcaacctcaacaaccttctaagaaatgtcattttcaatttccttgacccacatctctaag |
507 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7458585 |
cggaatctgctccacctccccaatgtctttccttacaacctcagcctcaacaatgttctaagaaatgtcattttcaatttccttgacccacatctctaag |
7458486 |
T |
|
| Q |
508 |
gatgccactttggcagaaagag |
529 |
Q |
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||| |||||||||||||||||| |
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| T |
7458485 |
gataccactttggcagaaagag |
7458464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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