View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9625_low_14 (Length: 319)
Name: NF9625_low_14
Description: NF9625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9625_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 342500 - 342768
Alignment:
| Q |
1 |
ttatctagatagcttgaagaatagagaacgattcacagaacaaggagatgctattacattcgagggtgaagtgagtatatgttatcaattgagaaatttc |
100 |
Q |
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| T |
342500 |
ttatctagatagcttgaagaatagagaaagattcacagaacaaggagatgctattacattcgagggtgaagtgagtatatgttatcaattgagcaatttc |
342599 |
T |
|
| Q |
101 |
ttgtgttttattgattcaactatgaaactcttaaa----gttatgtttatttgatgatgaaggtggacaaagtgtacttaagcacacccacaaaaatagc |
196 |
Q |
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||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
342600 |
ttgtgttttattgattcaaatatgaaactcttaaaaaaagttttgtttatttgatgatgaaggtggacaaagtgtacttaagcacacccacaaaaattgc |
342699 |
T |
|
| Q |
197 |
tataattgaccatgaaagaaagagaacttttgaaatacgaaaagatgggcttcctgatgctggttagta |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
342700 |
tataattgaccatgaaagaaagagaacttttgaaatacgaaaagatgggcttcctgatgctggttagta |
342768 |
T |
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