View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9625_low_16 (Length: 317)

Name: NF9625_low_16
Description: NF9625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9625_low_16
NF9625_low_16
[»] chr4 (30 HSPs)
chr4 (16-301)||(12121394-12121680)
chr4 (18-281)||(1513346-1513607)
chr4 (16-275)||(1489298-1489558)
chr4 (16-275)||(1537704-1537964)
chr4 (97-278)||(1508021-1508203)
chr4 (80-271)||(546819-547011)
chr4 (109-244)||(640849-640984)
chr4 (83-272)||(553384-553574)
chr4 (80-198)||(8184031-8184149)
chr4 (83-290)||(1552771-1552982)
chr4 (81-244)||(7307794-7307957)
chr4 (83-185)||(1548428-1548530)
chr4 (80-188)||(1524487-1524595)
chr4 (80-145)||(532222-532287)
chr4 (80-266)||(55505109-55505293)
chr4 (80-140)||(1519143-1519203)
chr4 (69-151)||(1600446-1600528)
chr4 (80-198)||(8187092-8187210)
chr4 (80-198)||(55908729-55908847)
chr4 (92-149)||(659738-659795)
chr4 (112-237)||(3438599-3438723)
chr4 (84-188)||(558488-558592)
chr4 (81-149)||(1545802-1545870)
chr4 (80-150)||(12116576-12116646)
chr4 (210-281)||(1534122-1534194)
chr4 (83-194)||(570335-570446)
chr4 (160-274)||(7225964-7226079)
chr4 (80-186)||(53761773-53761877)
chr4 (80-185)||(566182-566287)
chr4 (210-274)||(644734-644799)
[»] chr8 (6 HSPs)
chr8 (80-256)||(18315274-18315451)
chr8 (81-244)||(27922442-27922605)
chr8 (80-194)||(34936164-34936278)
chr8 (69-237)||(32151242-32151410)
chr8 (83-129)||(21235607-21235653)
chr8 (79-123)||(17636401-17636445)
[»] chr3 (5 HSPs)
chr3 (80-265)||(51113782-51113968)
chr3 (80-186)||(51120894-51121000)
chr3 (80-263)||(13470733-13470917)
chr3 (80-198)||(51764441-51764559)
chr3 (157-271)||(514806-514921)
[»] chr2 (3 HSPs)
chr2 (80-273)||(45245086-45245280)
chr2 (79-149)||(32785772-32785842)
chr2 (80-198)||(1037665-1037783)
[»] chr6 (23 HSPs)
chr6 (80-263)||(6415880-6416064)
chr6 (80-188)||(6402850-6402958)
chr6 (112-256)||(6585270-6585415)
chr6 (80-244)||(19632373-19632537)
chr6 (80-186)||(6394856-6394962)
chr6 (83-241)||(9411292-9411450)
chr6 (85-151)||(14802363-14802429)
chr6 (80-149)||(6432190-6432259)
chr6 (109-165)||(6596958-6597014)
chr6 (83-274)||(11936279-11936471)
chr6 (83-274)||(11948259-11948451)
chr6 (81-244)||(6603204-6603367)
chr6 (223-293)||(28934933-28935004)
chr6 (109-151)||(10579766-10579808)
chr6 (80-265)||(14820605-14820791)
chr6 (81-194)||(6423201-6423314)
chr6 (80-149)||(6589324-6589393)
chr6 (80-188)||(6409996-6410104)
chr6 (80-244)||(7994183-7994347)
chr6 (83-129)||(12102315-12102361)
chr6 (80-149)||(6594607-6594676)
chr6 (109-150)||(7119185-7119226)
chr6 (109-150)||(7131663-7131704)
[»] chr5 (6 HSPs)
chr5 (86-244)||(41901542-41901700)
chr5 (81-149)||(41889556-41889624)
chr5 (85-272)||(38267562-38267750)
chr5 (109-186)||(20478112-20478189)
chr5 (86-189)||(37937876-37937979)
chr5 (81-244)||(32267409-32267572)
[»] chr1 (5 HSPs)
chr1 (112-244)||(7554422-7554554)
chr1 (92-149)||(9586668-9586725)
chr1 (83-149)||(19468503-19468569)
chr1 (81-147)||(52082612-52082678)
chr1 (80-149)||(43634936-43635005)
[»] chr7 (2 HSPs)
chr7 (80-265)||(15092152-15092338)
chr7 (94-194)||(10614577-10614677)
[»] scaffold0295 (1 HSPs)
scaffold0295 (80-151)||(625-696)
[»] scaffold0807 (1 HSPs)
scaffold0807 (81-143)||(1466-1528)
[»] scaffold0041 (1 HSPs)
scaffold0041 (109-198)||(39164-39253)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 12121394 - 12121680
Alignment:
Q  16 ttaaggacatgttccgagattacgcatttgaacttaaccagttgtttaggaaggaagctgcgccgaatgaactttaaagttcccaaactagaagtgttga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12121394 ttaaggacatgttccgagattacgcatttgaacttaaccagttgtttaggaaggaagctgcgccgaatgaactttgaagttcccaaactagaagtgttga 12121493  T
Q  116 acttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactcttactggaatggtgtattgttgtcac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  || |||||||    
T  12121494 acttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactctcactggaatggtgcttttttgtcac 12121593  T
Q  216 agagatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgt 301  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12121594 agagatgggagtgaagcatgtggtagaaaaatgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgt 12121680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 1513346 - 1513607
Alignment:
Q  18 aaggacatgttccgagattacgcatttgaacttaaccagttgtttaggaaggaagctgcgccgaatgaactttaaagttcccaaactagaagtgttgaac 117  Q
    ||||| |||||| ||||||| |||||| ||| |||| |  | |||||||| | ||||| || ||||||||||| ||||||||||||||||||||||||||    
T  1513346 aaggatatgttctgagattaggcatttaaacataacaaactatttaggaaaggagctgtgcggaatgaactttgaagttcccaaactagaagtgttgaac 1513445  T
Q  118 ttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactcttactggaatggtgtattgttgtcacag 217  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||| || | ||||   |||||||||    
T  1513446 ttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggcttttgcaactcatactgaaaggttgta---ttgtcacag 1513542  T
Q  218 agatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagatcgatttgaaatattgt 281  Q
    ||||||||||||||| |||| ||| ||| ||||||||||| ||||||||| ||||||||||||||    
T  1513543 agatgggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttgaaatattgt 1513607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 1489298 - 1489558
Alignment:
Q  16 ttaaggacatgttccgagattacgcatttgaacttaaccagttgtttaggaaggaagctgcgccgaatgaactttaaagttcccaaactagaagtgttga 115  Q
    |||| ||||||||| || |||| ||||||||||||||  || | |||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||    
T  1489298 ttaaagacatgttctgatattaggcatttgaacttaagaagatctttaggaaagaagctgtgcggaatgaactttgaagttcccaaactagaagtgttga 1489397  T
Q  116 acttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactcttactggaatggtgtattgttgtcac 215  Q
    |||||||||||||||||||| |  | |||||||| |  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||  ||||||    
T  1489398 acttgtcatatacaaatgttaacaacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaactcttactggaagggtgttttaatgtcac 1489497  T
Q  216 agagatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagatcgatttgaaa 275  Q
    ||||| |||||||||||||||| ||| ||| ||| ||||||||||||||||| ||||||||    
T  1489498 agagaagggagtgaagcatgtgctagaaaaatgcgcacaactaagagagatcaatttgaaa 1489558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 1537704 - 1537964
Alignment:
Q  16 ttaaggacatgttccgagattacgcatttgaacttaaccagttgtttaggaaggaagctgcgccgaatgaactttaaagttcccaaactagaagtgttga 115  Q
    |||||||||||||||||| ||| |||||||||||||||| | |    |||  |||||||||   ||||||||||| ||||||||||||||||||||||||    
T  1537704 ttaaggacatgttccgagcttaggcatttgaacttaaccggcttaagaggttggaagctgcatggaatgaactttgaagttcccaaactagaagtgttga 1537803  T
Q  116 acttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactcttactggaatggtgtattgttgtcac 215  Q
    |||||||||||||||||||| ||||  ||||||| |  ||||||||||||||||| ||||||||||||||||| |||||||||   |||  | |||||||    
T  1537804 acttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaacttttactggaactttgttatcttgtcac 1537903  T
Q  216 agagatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagatcgatttgaaa 275  Q
    | ||| |||||||||| ||||| ||| ||| ||||| ||||||||||||||| ||||||||    
T  1537904 acagaagggagtgaagtatgtgctagaaaaatgcactcaactaagagagatcaatttgaaa 1537964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 1508021 - 1508203
Alignment:
Q  97 cccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactcttactgg 196  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||| |  ||||||||||||||||| |||||||||||||||||| | ||||    
T  1508021 cccaaactagaagtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaactcgtgctgg 1508120  T
Q  197 aatggtgtattgttgtcacagagatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagatcgatttgaaatat 278  Q
    |  | |||  ||  ||||| ||||||||||||||||||| | ||| ||| ||||||||||||||||||||| |||||||||||    
T  1508121 atggttgtgctgcagtcaccgagatgggagtgaagcatgcgctagaaaaatgcacacaactaagagagatcaatttgaaatat 1508203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 80 - 271
Target Start/End: Complemental strand, 547011 - 546819
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    ||||||||||| ||||||| ||| | || ||| |||||||||||  ||||| |||  |||||||||||||||  || ||||||||| ||||  |||||||    
T  547011 gaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggct 546912  T
Q  180 tttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagatcgattt 271  Q
    |||| || | |||||||||   ||| ||  ||||||||||| ||||||||| |||||| ||| ||| |||||| |||||||||||||| ||||    
T  546911 tttggaattgttactggaagaatgttttcatgtcacagagaagggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaattt 546819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 109 - 244
Target Start/End: Complemental strand, 640984 - 640849
Alignment:
Q  109 gtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactcttactggaatggtgtattg 208  Q
    ||||||||||||||| ||||||| ||||||||||||||||||| ||| | |||||||  ||||||||| |||||||| || |||||||||   |||  |     
T  640984 gtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaagattgtcatt 640885  T
Q  209 ttgtcacagagatgggagtgaagcatgtggtagaaa 244  Q
     ||| ||| ||| ||||||||| |||||||||||||    
T  640884 atgtaacaaagaagggagtgaatcatgtggtagaaa 640849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 272
Target Start/End: Complemental strand, 553574 - 553384
Alignment:
Q  83 tgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctttt 182  Q
    ||||||||||||||| |||||| || |||||||||||||||| |||||  |||||||||||| ||||    || || |||||| ||||   |||||||||    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggctttt 553475  T
Q  183 gcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagatcgatttg 272  Q
    |||||| ||  ||   |  |||| || ||||||||| |  |||||||| |||||||||| ||| ||||||||||| |||||||||||||||    
T  553474 gcaactgttgttgttttattgtagtgatgtcacagataaaggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttg 553384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 8184031 - 8184149
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||| ||||||  |||||||||  | ||||||  | |||||||||| ||||  |||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggct 8184130  T
Q  180 tttgcaactcttactggaa 198  Q
    |||| |||| |||||||||    
T  8184131 tttggaactgttactggaa 8184149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 83 - 290
Target Start/End: Original strand, 1552771 - 1552982
Alignment:
Q  83 tgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctttt 182  Q
    |||||||| || |||||||||| ||||||||||| |||||| |||||||| || ||||||||||||||   || || ||||||  ||| |||||||||||    
T  1552771 tgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtgggctttt 1552870  T
Q  183 gcaactcttactggaatggtgt-attgt--tgtcacagagatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagatcgatttgaaatat 278  Q
    ||| || ||||| |||   ||| ||| |  |||||| |||| ||||||||||||||| | || ||| |||   ||||||||||||||| ||||||||  |    
T  1552871 gcagctgttactagaacaatgtaattattatgtcaccgagaagggagtgaagcatgtcggagaaaattgcttgcaactaagagagatcaatttgaaaggt 1552970  T
Q  279 tgtcttcaagtg 290  Q
    |||||| |||||    
T  1552971 tgtcttaaagtg 1552982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 244
Target Start/End: Complemental strand, 7307957 - 7307794
Alignment:
Q  81 aatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctt 180  Q
    |||||||||||||||||||||| | || || |||||||||||||||||| | |||||||||||| ||||     | ||||||||| ||||  || |||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggctt 7307858  T
Q  181 ttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtagaaa 244  Q
    ||||| || ||||||||| | ||| || |||||||   ||  ||| ||||||||||||||||||    
T  7307857 ttgcacctgttactggaaggttgttttattgtcacgatgactggattgaagcatgtggtagaaa 7307794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 1548428 - 1548530
Alignment:
Q  83 tgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctttt 182  Q
    |||||||| || |||||||||| || ||||||||||||||| |||||| | |||||||||||||||||   || ||||||||| ||||  ||||||||||    
T  1548428 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 1548527  T
Q  183 gca 185  Q
    |||    
T  1548528 gca 1548530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 1524487 - 1524595
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    ||||||||||| ||||||||||  | || |||||||| ||||||  ||||| ||||||||||||||||||||   | |||||| || |||| ||||||||    
T  1524487 gaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggct 1524586  T
Q  180 tttgcaact 188  Q
    |||||||||    
T  1524587 tttgcaact 1524595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 532287 - 532222
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaa 145  Q
    ||||||||||| |||| ||||| ||||| |||||||||||||||||||||||  ||||||||||||    
T  532287 gaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaa 532222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 55505109 - 55505293
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||||||||||| ||| ||| ||||||| ||||||||||||||||||||||| ||||| |||| |||||| |  || | |||||||  ||| ||||| ||    
T  55505109 gaatgaactttagagtcccccaactagaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggact 55505208  T
Q  180 tttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatc 266  Q
    ||||||  | ||| || ||     ||  | ||||||||||| ||||||||| || ||| ||||||  |||||||||||||||||||||    
T  55505209 tttgcatttgttattgaaaaa---tagcgatgtcacagagaagggagtgaaacacgtgttagaaaactgcacacaactaagagagatc 55505293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 1519143 - 1519203
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatga 140  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| ||||||  ||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatga 1519203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 1600528 - 1600446
Alignment:
Q  69 gaagctgcgccgaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactct 151  Q
    |||||||||  ||||||||||| ||||||  ||||| || ||||||||||||||||||||||  ||||| |||||| ||||||    
T  1600528 gaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacgatgaagcactct 1600446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 8187092 - 8187210
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    ||||||||||| || || ||||||| || ||||||||||||||| ||||||  ||||||||| ||||||| |  | ||| |||||| ||||  |||||||    
T  8187092 gaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggct 8187191  T
Q  180 tttgcaactcttactggaa 198  Q
    ||||||  | |||||||||    
T  8187192 tttgcagttgttactggaa 8187210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 55908729 - 55908847
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||| ||||||||||||||  || |||| ||||| ||||||||| |||||  ||||||||||||||||||||   | |||||||||  |||  |||||||    
T  55908729 gaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggct 55908828  T
Q  180 tttgcaactcttactggaa 198  Q
    ||| ||||| || ||||||    
T  55908829 tttacaactgtttctggaa 55908847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 659795 - 659738
Alignment:
Q  92 aagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 149  Q
    |||||||||||||||| ||||||||||||||| |||||| |||| || ||||||||||    
T  659795 aagttcccaaactagaggtgttgaacttgtcacatacaagtgttaataatgaaacact 659738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 237
Target Start/End: Original strand, 3438599 - 3438723
Alignment:
Q  112 ttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactcttactggaatggtgtattgttg 211  Q
    |||| ||||||| ||||||  ||||||||| ||| ||||   |||||||||||| ||||  |||||||||||||||| ||||||||||  ||||  | ||    
T  3438599 ttgagcttgtcacatacaagagttgatgat-aaatactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtg 3438697  T
Q  212 tcacagagatgggagtgaagcatgtg 237  Q
    |||||| || |||||||||| |||||    
T  3438698 tcacagtgaagggagtgaagtatgtg 3438723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 188
Target Start/End: Complemental strand, 558592 - 558488
Alignment:
Q  84 gaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttg 183  Q
    ||||||| ||||| |||| ||||  ||||||||||||||||  ||| || ||||||||||| |||||   || ||||||||| |||| ||||||||||||    
T  558592 gaactttgaagttgccaacctaggggtgttgaacttgtcattaacatatattgatgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttg 558493  T
Q  184 caact 188  Q
     ||||    
T  558492 gaact 558488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 1545870 - 1545802
Alignment:
Q  81 aatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 149  Q
    |||||||||||||||||| ||||| || |||||||||||||  | |||||  |||||||||||||||||    
T  1545870 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 1545802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 12116576 - 12116646
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactc 150  Q
    ||||||||||| | ||||| ||  |||| ||||||||||||||| |||||| ||||||||||||| |||||    
T  12116576 gaatgaactttgatgttccaaatttagaggtgttgaacttgtcacatacaagtgttgatgatgaatcactc 12116646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 1534122 - 1534194
Alignment:
Q  210 tgtcacagagatgggagtgaagcatgtggtaga-aagtgcacacaactaagagagatcgatttgaaatattgt 281  Q
    ||||||||||| |||||| |||||||||||||| || ||  ||||||||  |||||||||||||| |||||||    
T  1534122 tgtcacagagaagggagttaagcatgtggtagagaactgtgcacaactacaagagatcgatttgatatattgt 1534194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 570446 - 570335
Alignment:
Q  83 tgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctttt 182  Q
    |||||||| |||||| |||||| || |||||||||||||||||||||   |||||| | |||  |||||   | || |||||| |||| || ||||||||    
T  570446 tgaactttgaagttctcaaactcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcgcgggctttt 570347  T
Q  183 gcaactcttact 194  Q
    |||||| |||||    
T  570346 gcaactgttact 570335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 274
Target Start/End: Original strand, 7225964 - 7226079
Alignment:
Q  160 tcaaagtgttgccgtgggcttttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtag-aaagtgcacacaactaa 258  Q
    |||||| ||||  |||| ||||||||||| ||||||||| | ||| |||  ||||| |||| |||| ||||||| ||||||| ||| ||||  ||||| |    
T  7225964 tcaaagagttgttgtggacttttgcaactattactggaaagttgttttgaggtcaccgagaagggattgaagcacgtggtagaaaactgcaagcaactga 7226063  T
Q  259 gagagatcgatttgaa 274  Q
    |||||||| |||||||    
T  7226064 gagagatcaatttgaa 7226079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 53761773 - 53761877
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||||||||||  ||||||||| ||||| | |||||||||||||| ||| || ||| | ||| |||||||||  || ||||| |||  ||| ||||||||    
T  53761773 gaatgaactttgtagttcccaagctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactct--gtgatctcgaagaattgtcgtgggct 53761870  T
Q  180 tttgcaa 186  Q
    |||||||    
T  53761871 tttgcaa 53761877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 566287 - 566182
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    ||||||||||| ||||||  ||||| |||  |||| | || |||| | |||  |||||||||||||||||||  || ||||||||||  || ||||||||    
T  566287 gaatgaactttgaagttctaaaacttgaaacgttggatttatcatgttcaagcgttgatgatgaaacactctatgtgatctcaaagtactgtcgtgggct 566188  T
Q  180 tttgca 185  Q
    ||||||    
T  566187 tttgca 566182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 644799 - 644734
Alignment:
Q  210 tgtcacagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaa 274  Q
    |||||| ||||  |||||||| |||||||| ||||  ||||||||||| |||||||||||||||||    
T  644799 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaa 644734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 80 - 256
Target Start/End: Original strand, 18315274 - 18315451
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    ||||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||||||||| ||||||  || ||||||||| |||| ||| ||||    
T  18315274 gaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtaggct 18315373  T
Q  180 tttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtag-aaagtgcacacaact 256  Q
    ||||||||| ||| ||||| | |||  || |||||||||||  ||||  ||| ||||||||| ||| |||||||||||    
T  18315374 tttgcaactgttattggaacgctgttgtgatgtcacagagaaaggagaaaagtatgtggtagaaaactgcacacaact 18315451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 244
Target Start/End: Complemental strand, 27922605 - 27922442
Alignment:
Q  81 aatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctt 180  Q
    |||||||||| ||||||||||| | || |||||||||||||||||||||||||||||||||||| |||| |   | ||||||||| ||||  ||||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggctt 27922506  T
Q  181 ttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtagaaa 244  Q
    ||| || | | ||| |||   |||| || | ||||| ||| ||||||||| |||||||||||||    
T  27922505 ttgaaattgtcacttgaaaattgtaatgatttcacaaagaagggagtgaaccatgtggtagaaa 27922442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 34936164 - 34936278
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||||| |||| | ||||| |||||||| |||||| |||||||||||||||  ||||||||| |||||||||  |  ||| ||||| |||| ||||||||    
T  34936164 gaatgatctttgatgttccaaaactagaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggct 34936263  T
Q  180 tttgcaactcttact 194  Q
    ||||||||| |||||    
T  34936264 tttgcaactattact 34936278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 237
Target Start/End: Complemental strand, 32151410 - 32151242
Alignment:
Q  69 gaagctgcgccgaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgt 168  Q
    |||||||||  ||||||||||  ||||| |||| || || ||||| |||||||||| |||||   ||||||||||||||||||  || ||||||||| ||    
T  32151410 gaagctgcgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagt 32151311  T
Q  169 tgccgtgggcttttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtg 237  Q
    ||  |||||||||||||||| ||| |||  |  ||||    ||||||||||| ||| ||||||||||||    
T  32151310 tgtagtgggcttttgcaactgttattggtgtcttgtaaatatgtcacagagaagggggtgaagcatgtg 32151242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 21235653 - 21235607
Alignment:
Q  83 tgaactttaaagttcccaaactagaagtgttgaacttgtcatataca 129  Q
    |||||||| ||||||||||||| || |||||||||||||||||||||    
T  21235653 tgaactttgaagttcccaaactggaggtgttgaacttgtcatataca 21235607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 17636401 - 17636445
Alignment:
Q  79 cgaatgaactttaaagttcccaaactagaagtgttgaacttgtca 123  Q
    |||||||||||| ||||||||||| | || |||||||||||||||    
T  17636401 cgaatgaactttgaagttcccaaattggaggtgttgaacttgtca 17636445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 265
Target Start/End: Original strand, 51113782 - 51113968
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    ||||||||||| ||| ||||||||| || |||||  |||||||| ||||||  |||||||||||||||||||  || ||||| ||| ||||  |||||||    
T  51113782 gaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggct 51113881  T
Q  180 tttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagat 265  Q
    ||||||||| |||||| ||   |||     ||||||||||| |||||||||||||||||||| ||| |||||| |||||||||||||    
T  51113882 tttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagat 51113968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 51120894 - 51121000
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    ||||||||||| |||||| |||| | || ||||||||||||||  ||||||  ||||||||||||| ||| |  |||||||||||| |||| ||||||||    
T  51120894 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggct 51120993  T
Q  180 tttgcaa 186  Q
    |||||||    
T  51120994 tttgcaa 51121000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 263
Target Start/End: Original strand, 13470733 - 13470917
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||||||||||   |||||||| || || ||||||||||||||| ||||||| ||| ||||| |||||||||   | |||||||||  |||  |||||||    
T  13470733 gaatgaactttgttgttcccaatctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggct 13470832  T
Q  180 tttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtaga-aagtgcacacaactaagagag 263  Q
    ||||||||| ||||| |||   |||  |  |||||||||   ||||||||| ||||||||||| || |||||||| |||||||||    
T  13470833 tttgcaactattacttgaactttgtcataatgtcacagaagagggagtgaaacatgtggtagagaactgcacacagctaagagag 13470917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 51764441 - 51764559
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||||||||||  |||||| || || || |||||  ||||||||| |||||| ||||||||| |||||||||  |  |||||||||  |||  | |||||    
T  51764441 gaatgaactttgcagttccgaagctggaggtgttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggct 51764540  T
Q  180 tttgcaactcttactggaa 198  Q
    ||||||||| |||||||||    
T  51764541 tttgcaactattactggaa 51764559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 514806 - 514921
Alignment:
Q  157 atctcaaagtgttgccgtgggcttttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggt-agaaagtgcacacaac 255  Q
    ||||| ||| ||||| |||||||||||||||| |||||| ||   |||   | | ||||||||| |||||||||||||||||| | ||| ||||||| ||    
T  514806 atctcgaagagttgctgtgggcttttgcaactattactgcaaaattgtgaaggtatcacagagacgggagtgaagcatgtggtgaaaaactgcacacgac 514905  T
Q  256 taagagagatcgattt 271  Q
    | ||||||||| ||||    
T  514906 tgagagagatcaattt 514921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 273
Target Start/End: Original strand, 45245086 - 45245280
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||| |||||| ||||||| ||||| || |||||||| |||||| | ||||  ||||||||||||||||||   || ||||||||| |||| ||||||||    
T  45245086 gaataaactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggct 45245185  T
Q  180 tttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagatcgatttga 273  Q
    ||||||||| ||| || ||   |||  |  ||||||||| | ||||||||| |||||||||| ||| ||||||||||| | ||||||| ||||||    
T  45245186 tttgcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttga 45245280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 32785772 - 32785842
Alignment:
Q  79 cgaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 149  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| ||||||   ||||||||||| ||||    
T  32785772 cgaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcact 32785842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 1037665 - 1037783
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||| ||||||||||||||  || |||| ||||| ||||||||| |||||  ||||||||||||||||||||   | |||||||||  |||  |||||||    
T  1037665 gaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggct 1037764  T
Q  180 tttgcaactcttactggaa 198  Q
    ||| ||||| || ||||||    
T  1037765 tttacaactgtttctggaa 1037783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 263
Target Start/End: Complemental strand, 6416064 - 6415880
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    ||||| |||||  ||||||||| || || ||||||||||||||| ||||||| ||| ||||| |||| ||||  || |||||||||  |||  | |||||    
T  6416064 gaatggactttgtagttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcgggct 6415965  T
Q  180 tttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtaga-aagtgcacacaactaagagag 263  Q
    ||||||||| ||||| ||||  |||  |  |||||||||  |||||||||| ||||||||||| || ||||||||||||||||||    
T  6415964 tttgcaactattacttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggtagagaactgcacacaactaagagag 6415880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 6402958 - 6402850
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||| ||||||  ||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||  || |||||||||  |||  |||||||    
T  6402958 gaataaactttgcagttccccaactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggct 6402859  T
Q  180 tttgcaact 188  Q
    |||| ||||    
T  6402858 tttgaaact 6402850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 6585270 - 6585415
Alignment:
Q  112 ttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactcttactggaatggtgtattgttg 211  Q
    |||||||||||| ||||||| |||||||||||||||||||  || ||||||||| ||||   || ||||||| |||| |||||| || | |||     ||    
T  6585270 ttgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatg 6585369  T
Q  212 tcacagagatgggagtgaagcatgtggtagaaa-gtgcacacaact 256  Q
    ||||||||| |||| |||| |||||||||||||  |||||||||||    
T  6585370 tcacagagaagggactgaaacatgtggtagaaatttgcacacaact 6585415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 244
Target Start/End: Complemental strand, 19632537 - 19632373
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||| ||||||  ||||||||| ||||| |||||| ||||||| |||||||| |||||||||||   ||| |  || |||||||||  |||  |||||||    
T  19632537 gaataaactttctagttcccaagctagaggtgttggacttgtcgtatacaaaggttgatgatgagcaactttttgtgatctcaaagaattgttgtgggct 19632438  T
Q  180 tttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtagaaa 244  Q
    |||||||||||||||| ||   |||  |  | ||||||||| ||||||||| || ||||||||||    
T  19632437 tttgcaactcttactgaaaaattgtgctaatatcacagagaagggagtgaaacacgtggtagaaa 19632373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 6394962 - 6394856
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||||||||||  ||||||| | || || ||||||||||||||| ||||||  |||||||||||||| || || || |||||||||  |||  |||||||    
T  6394962 gaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggct 6394863  T
Q  180 tttgcaa 186  Q
    |||||||    
T  6394862 tttgcaa 6394856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 241
Target Start/End: Complemental strand, 9411450 - 9411292
Alignment:
Q  83 tgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctttt 182  Q
    |||||||| | |||||||| || || |||||||||||||||||||||  ||||   ||||||| |||||  |  |||||||||  ||| ||||| |||||    
T  9411450 tgaactttgaggttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggactttt 9411351  T
Q  183 gcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtag 241  Q
    |||||| |||||| |||| |||  |  ||||| ||| | |||||||| |||||||||||    
T  9411350 gcaactgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggtag 9411292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 14802429 - 14802363
Alignment:
Q  85 aactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactct 151  Q
    |||||| ||||||||||  | ||||||||||| |||||| ||||||| |||||||||||||||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactct 14802363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 6432259 - 6432190
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 149  Q
    ||||||||||| |||||||||| ||  | ||||||||||||||| ||||||  |||||||||||||||||    
T  6432259 gaatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacact 6432190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 6596958 - 6597014
Alignment:
Q  109 gtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaag 165  Q
    |||||||||||||||  |||||||||||||||||||||||||| ||  |||||||||    
T  6596958 gtgttgaacttgtcaagtacaaatgttgatgatgaaacactctacgctatctcaaag 6597014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 274
Target Start/End: Original strand, 11936279 - 11936471
Alignment:
Q  83 tgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctttt 182  Q
    |||||||| ||||||||||||| || |||||| ||||||||| |||||  ||||| ||| || ||||||     ||||||||| ||||  ||||||||||    
T  11936279 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11936378  T
Q  183 gcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagatcgatttgaa 274  Q
    |||||| | |||  |||  |||   | ||||||||| |  ||||||| ||||||||| | ||| ||||||||| | |||||| ||||||||||    
T  11936379 gcaactgtcacttaaattttgtgaaggtgtcacagacaaaggagtgacgcatgtggttgaaaaatgcacacaaatgagagaggtcgatttgaa 11936471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 274
Target Start/End: Original strand, 11948259 - 11948451
Alignment:
Q  83 tgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctttt 182  Q
    |||||||| ||||||||||||| || |||||| ||||||||| |||||  ||||| ||| || ||||||     ||||||||| ||||  ||||||||||    
T  11948259 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11948358  T
Q  183 gcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagatcgatttgaa 274  Q
    |||||| | |||  |||  |||   | ||||||||| |  ||||||| ||||||||| | ||| ||||||||| | |||||| ||||||||||    
T  11948359 gcaactgtcacttaaattttgtgaaggtgtcacagacaaaggagtgacgcatgtggttgaaaaatgcacacaaatgagagaggtcgatttgaa 11948451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 244
Target Start/End: Original strand, 6603204 - 6603367
Alignment:
Q  81 aatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctt 180  Q
    ||||||||||  | ||||||| ||| | |||||| ||||| || |||||  |||||||||||||||| |||  |  ||||||||| |||| | |||||||    
T  6603204 aatgaactttgtacttcccaagctacaggtgttggacttggcagatacaggtgttgatgatgaaacagtctatgcgatctcaaagagttgtcctgggctt 6603303  T
Q  181 ttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtagaaa 244  Q
    ||| |||| ||| || |||  |||  |  |||||||||||  |||||||| |||||||||||||    
T  6603304 ttggaactattattgaaatattgttattatgtcacagagaaaggagtgaaacatgtggtagaaa 6603367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 28935004 - 28934933
Alignment:
Q  223 ggagtgaagcatgtggtagaaagt-gcacacaactaagagagatcgatttgaaatattgtcttcaagtgcat 293  Q
    |||||||||||||||||||||| | |||||||||||||||||||| ||||| |  ||||| || ||||||||    
T  28935004 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcat 28934933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 10579766 - 10579808
Alignment:
Q  109 gtgttgaacttgtcatatacaaatgttgatgatgaaacactct 151  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  10579766 gtgttgaacttgtcatatacaaaagttgatgataaaacactct 10579808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 265
Target Start/End: Complemental strand, 14820791 - 14820605
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||| ||||||  |||||||||  |||| ||||||||||| ||| ||||||| |||||| |||||||||| |   | ||||| |||  |||  |||||||    
T  14820791 gaattaactttgcagttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggct 14820692  T
Q  180 tttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggt-agaaagtgcacacaactaagagagat 265  Q
    ||||| | | ||||| |||   |||| || ||||||||||| ||| ||||| |||||||| | ||| |||||||| || ||||||||    
T  14820691 tttgcgattattacttgaaaaatgtaatgatgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagat 14820605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 6423314 - 6423201
Alignment:
Q  81 aatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctt 180  Q
    |||||||||| |||||||||| || || ||||||||||||||| ||||||  |||   ||| |||||||||  |  ||||||||| ||||  ||||| ||    
T  6423314 aatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggatt 6423215  T
Q  181 ttgcaactcttact 194  Q
    |||||||| |||||    
T  6423214 ttgcaactattact 6423201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 6589324 - 6589393
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 149  Q
    |||||||||||  ||||||||  || || ||||||||||||||| ||||||||||| ||||| |||||||    
T  6589324 gaatgaactttgtagttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacact 6589393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 6410104 - 6409996
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    ||||||||||| |||||||||| ||  | |||||||||| |||| ||||||  |||||||||||||| || |  || |||||||||  |||  || ||||    
T  6410104 gaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgtcggct 6410005  T
Q  180 tttgcaact 188  Q
    |||||||||    
T  6410004 tttgcaact 6409996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 244
Target Start/End: Original strand, 7994183 - 7994347
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||||||||||  |||||| || ||||| ||||||||| ||||| ||||||  ||| |||| |||||||| |  || |||||||||  |||   ||| ||    
T  7994183 gaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggact 7994282  T
Q  180 tttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtagaaa 244  Q
    ||||||||| ||||| |||   |||| || ||| || |||  ||||||||| |||||||||||||    
T  7994283 tttgcaactattacttgaactttgtaatgatgttaccgaggagggagtgaaacatgtggtagaaa 7994347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 12102361 - 12102315
Alignment:
Q  83 tgaactttaaagttcccaaactagaagtgttgaacttgtcatataca 129  Q
    |||||||| ||||||||||||| || ||||||||||||||| |||||    
T  12102361 tgaactttgaagttcccaaactggaggtgttgaacttgtcacataca 12102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 6594607 - 6594676
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 149  Q
    |||| ||||||  |||||||||||| || |||||| |||||||| ||||| | ||||||||||| |||||    
T  6594607 gaataaactttttagttcccaaactggaggtgttgtacttgtcaaatacagaggttgatgatgagacact 6594676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 7119226 - 7119185
Alignment:
Q  109 gtgttgaacttgtcatatacaaatgttgatgatgaaacactc 150  Q
    ||||||||||||||| |||| || ||||||||||||||||||    
T  7119226 gtgttgaacttgtcagatacgaaggttgatgatgaaacactc 7119185  T

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Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 7131704 - 7131663
Alignment:
Q  109 gtgttgaacttgtcatatacaaatgttgatgatgaaacactc 150  Q
    ||||||||||||||| |||| || ||||||||||||||||||    
T  7131704 gtgttgaacttgtcagatacgaaggttgatgatgaaacactc 7131663  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 244
Target Start/End: Original strand, 41901542 - 41901700
Alignment:
Q  86 actttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgca 185  Q
    ||||| ||||||||||||| || ||||||||||||||||||||||| |||||||||||| |||| |   | ||||||||| ||||  |||| |||||| |    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaa 41901641  T
Q  186 actcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtagaaa 244  Q
    | | | |||  ||   |||| || ||||||| ||| |||||||||||||||||||||||    
T  41901642 attgtcacttcaagattgtaatgatgtcacaaagaagggagtgaagcatgtggtagaaa 41901700  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 41889556 - 41889624
Alignment:
Q  81 aatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 149  Q
    |||||||||||||||||||||| | || ||||||||||| ||||||||||| |||||||||||||||||    
T  41889556 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacact 41889624  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 272
Target Start/End: Original strand, 38267562 - 38267750
Alignment:
Q  85 aactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgc 184  Q
    |||||| |||||||||| || || |||||| ||||| || ||||||  ||||||||||| |||||||  ||||||||||||   |||||||||||||||     
T  38267562 aactttgaagttcccaaccttgaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaaagacgtgccgtgggcttttga 38267661  T
Q  185 aactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggt-agaaagtgcacacaactaagagagatcgatttg 272  Q
    |||| |  ||| ||   ||||    |||||| |||| |||||||| ||||||||| | ||| |||||| |||| ||||||||| |||||    
T  38267662 aactgtcgctgcaactttgtacgaatgtcaccgagaagggagtgatgcatgtggtcaaaaactgcacaaaactcagagagatcaatttg 38267750  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 20478112 - 20478189
Alignment:
Q  109 gtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaa 186  Q
    |||||||||||||||||||||||||||||||| |||||| | || || ||||||| |  |||  ||||||||||||||    
T  20478112 gtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttgcaa 20478189  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 37937979 - 37937876
Alignment:
Q  86 actttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgca 185  Q
    ||||| |||||||||| || || |||||| ||||| || ||||||   |||||||| |||||||||  ||||||||||||   || ||||||||||||||    
T  37937979 actttgaagttcccaaccttgaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgtgggcttttgca 37937880  T
Q  186 actc 189  Q
    ||||    
T  37937879 actc 37937876  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 244
Target Start/End: Complemental strand, 32267572 - 32267409
Alignment:
Q  81 aatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctt 180  Q
    |||||||||| ||||||||||| | || || |||||||||||| | ||||  |||||||||||| |||| |   | ||||||||| ||||  ||||||||    
T  32267572 aatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggctt 32267473  T
Q  181 ttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtagaaa 244  Q
    ||| || | | |||  ||   |||| || | ||||| ||| ||||||||||||||| |||||||    
T  32267472 ttgaaattgtcacttaaaaattgtaatgatatcacaaagaagggagtgaagcatgtagtagaaa 32267409  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 244
Target Start/End: Complemental strand, 7554554 - 7554422
Alignment:
Q  112 ttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactcttactggaatggtgtattgttg 211  Q
    |||||||| |||||||||| ||||||||||||| ||||||   | ||||||||| ||||  |||| ||||| ||||| |||||| || | |||  |  ||    
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactgaaaggatgtgataatg 7554455  T
Q  212 tcacagagatgggagtgaagcatgtggtagaaa 244  Q
    ||||||| | |||||||||||||||||||||||    
T  7554454 tcacagaaaagggagtgaagcatgtggtagaaa 7554422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 9586725 - 9586668
Alignment:
Q  92 aagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 149  Q
    |||| ||||| ||||| ||||||||||||||||||||| ||||| |||||||||||||    
T  9586725 aagtccccaagctagaggtgttgaacttgtcatatacagatgttaatgatgaaacact 9586668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 19468503 - 19468569
Alignment:
Q  83 tgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 149  Q
    ||||||||  ||||||||| || || |||||||| |||||| ||||||| |||||||||||||||||    
T  19468503 tgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacact 19468569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 52082678 - 52082612
Alignment:
Q  81 aatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaaca 147  Q
    |||||||||| ||||| ||||| | || ||||||||||||||| | |||||  ||||||||||||||    
T  52082678 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaaca 52082612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 43635005 - 43634936
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 149  Q
    |||||| ||||| ||| ||| | ||||| | ||||||||||||||||||||| ||||| |||| ||||||    
T  43635005 gaatgacctttagagtcccccagctagaggcgttgaacttgtcatatacaaaggttgacgatggaacact 43634936  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 265
Target Start/End: Original strand, 15092152 - 15092338
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggct 179  Q
    |||||||||||  ||||||| | || || |||||||| |||||| | ||||| ||| ||||| |||||||||  |  |||||||||  |||  |||||||    
T  15092152 gaatgaactttgcagttcccgagctggaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtgggct 15092251  T
Q  180 tttgcaactcttactggaatggtgtattgttgtcacagagatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagat 265  Q
    ||||||||| ||||| ||||  |||  |  |||||||||  |||||||||| |||||| ||| ||| ||||||||| | ||||||||    
T  15092252 tttgcaactattacttgaattttgttataatgtcacagaagtgggagtgaaacatgtgctagaaaactgcacacaattgagagagat 15092338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 10614677 - 10614577
Alignment:
Q  94 gttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactcttac 193  Q
    |||||||| || || ||||||||||||||| |||| || ||| ||||| |||||||||  || ||||| |||   ||  |||||||||||||||| ||||    
T  10614677 gttcccaatctggaggtgttgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttgcaactattac 10614578  T
Q  194 t 194  Q
    |    
T  10614577 t 10614577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 625 - 696
Alignment:
Q  80 gaatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactct 151  Q
    |||| ||||||||||||||  || |||| ||||| ||||||||| |||||| ||| ||||||||||||||||    
T  625 gaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactct 696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 1466 - 1528
Alignment:
Q  81 aatgaactttaaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatga 143  Q
    ||||||||||  |||||| || ||||| |||||| |||||||| |||||||||||||||||||    
T  1466 aatgaactttgtagttcctaagctagaggtgttggacttgtcaaatacaaatgttgatgatga 1528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 39253 - 39164
Alignment:
Q  109 gtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactcttactggaa 198  Q
    |||||||||||| ||| |||||| ||| ||||||||||||| |  || ||||||||| ||||  ||||||||||||| ||  ||||||||    
T  39253 gtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgcacctgatactggaa 39164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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