View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9625_low_17 (Length: 311)

Name: NF9625_low_17
Description: NF9625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9625_low_17
NF9625_low_17
[»] chr7 (19 HSPs)
chr7 (11-295)||(11738145-11738432)
chr7 (136-295)||(11744779-11744938)
chr7 (20-109)||(15680836-15680925)
chr7 (20-107)||(20549820-20549907)
chr7 (20-109)||(32287406-32287495)
chr7 (15-109)||(33994239-33994333)
chr7 (20-109)||(21880179-21880268)
chr7 (13-82)||(5409767-5409836)
chr7 (20-89)||(26033393-26033462)
chr7 (20-99)||(598245-598324)
chr7 (20-111)||(22484050-22484141)
chr7 (20-82)||(2334314-2334376)
chr7 (63-109)||(5835274-5835320)
chr7 (32-89)||(6028683-6028740)
chr7 (40-109)||(8234173-8234242)
chr7 (20-89)||(24339700-24339769)
chr7 (20-80)||(17852056-17852116)
chr7 (77-109)||(22602710-22602742)
chr7 (15-51)||(24289869-24289905)
[»] chr8 (19 HSPs)
chr8 (15-109)||(40332218-40332312)
chr8 (20-109)||(3025578-3025667)
chr8 (15-109)||(18407746-18407840)
chr8 (29-109)||(4298841-4298918)
chr8 (20-109)||(14134726-14134815)
chr8 (20-104)||(926731-926815)
chr8 (61-109)||(4786322-4786370)
chr8 (25-101)||(5813627-5813703)
chr8 (25-99)||(126295-126369)
chr8 (14-88)||(29510230-29510304)
chr8 (20-106)||(36450697-36450783)
chr8 (20-89)||(21465470-21465539)
chr8 (25-82)||(22197679-22197736)
chr8 (20-89)||(22652034-22652103)
chr8 (25-106)||(31109466-31109547)
chr8 (77-109)||(8847283-8847315)
chr8 (77-109)||(11927086-11927118)
chr8 (28-108)||(15023208-15023288)
chr8 (77-109)||(26902175-26902207)
[»] chr1 (32 HSPs)
chr1 (20-106)||(37598861-37598947)
chr1 (20-109)||(1815284-1815373)
chr1 (20-109)||(18337356-18337445)
chr1 (20-109)||(22515830-22515919)
chr1 (25-109)||(5898214-5898298)
chr1 (20-108)||(46348326-46348414)
chr1 (14-109)||(51410052-51410147)
chr1 (40-109)||(7353455-7353525)
chr1 (31-109)||(40181898-40181976)
chr1 (20-106)||(42359392-42359478)
chr1 (20-109)||(1486647-1486741)
chr1 (32-109)||(38078616-38078693)
chr1 (28-109)||(40258884-40258965)
chr1 (16-59)||(21038163-21038206)
chr1 (39-109)||(28674827-28674897)
chr1 (75-109)||(30749867-30749901)
chr1 (75-109)||(30771318-30771352)
chr1 (15-89)||(40917807-40917881)
chr1 (20-89)||(6427522-6427591)
chr1 (20-89)||(31694642-31694711)
chr1 (75-108)||(52903277-52903310)
chr1 (20-52)||(2218312-2218344)
chr1 (20-108)||(5927283-5927371)
chr1 (77-109)||(5944310-5944342)
chr1 (20-52)||(16812640-16812672)
chr1 (15-59)||(21365990-21366034)
chr1 (75-111)||(24334703-24334739)
chr1 (25-109)||(26830615-26830698)
chr1 (20-88)||(32461396-32461464)
chr1 (77-109)||(34371740-34371772)
chr1 (40-108)||(39130730-39130798)
chr1 (77-109)||(44482257-44482289)
[»] chr3 (18 HSPs)
chr3 (20-109)||(55401102-55401191)
chr3 (15-109)||(40993273-40993367)
chr3 (20-109)||(18426976-18427065)
chr3 (32-109)||(10954979-10955056)
chr3 (20-109)||(35222965-35223054)
chr3 (20-109)||(20503492-20503581)
chr3 (28-109)||(28918028-28918111)
chr3 (20-102)||(13845468-13845550)
chr3 (15-89)||(41961577-41961651)
chr3 (20-109)||(8842356-8842445)
chr3 (25-109)||(3631711-3631795)
chr3 (26-90)||(4987229-4987293)
chr3 (30-108)||(7171529-7171607)
chr3 (75-109)||(7928477-7928511)
chr3 (40-109)||(34307738-34307812)
chr3 (75-108)||(8383285-8383318)
chr3 (25-106)||(25093532-25093613)
chr3 (20-52)||(11610593-11610625)
[»] scaffold0053 (1 HSPs)
scaffold0053 (20-101)||(8833-8914)
[»] chr6 (20 HSPs)
chr6 (20-109)||(17841532-17841621)
chr6 (15-109)||(28715322-28715416)
chr6 (20-109)||(28152125-28152214)
chr6 (20-109)||(34595161-34595250)
chr6 (15-89)||(10339052-10339126)
chr6 (40-110)||(29020938-29021008)
chr6 (14-89)||(8365445-8365520)
chr6 (15-109)||(4877970-4878063)
chr6 (19-109)||(32978841-32978931)
chr6 (20-109)||(7378006-7378095)
chr6 (75-109)||(7265591-7265625)
chr6 (20-109)||(6898224-6898313)
chr6 (14-71)||(8776905-8776962)
chr6 (26-87)||(17435259-17435320)
chr6 (40-109)||(19040379-19040448)
chr6 (75-108)||(21924933-21924966)
chr6 (20-52)||(426481-426513)
chr6 (77-109)||(7027269-7027301)
chr6 (77-109)||(9025494-9025526)
chr6 (28-104)||(23771610-23771686)
[»] chr5 (13 HSPs)
chr5 (20-109)||(21576688-21576777)
chr5 (20-109)||(21190999-21191088)
chr5 (15-109)||(43564908-43565002)
chr5 (40-107)||(30502351-30502418)
chr5 (40-107)||(30542694-30542761)
chr5 (25-110)||(30098986-30099071)
chr5 (19-88)||(39268540-39268609)
chr5 (20-89)||(39698599-39698668)
chr5 (75-109)||(28588672-28588706)
chr5 (20-82)||(31084382-31084444)
chr5 (20-89)||(32766875-32766944)
chr5 (28-109)||(42893387-42893468)
chr5 (25-109)||(42029779-42029863)
[»] chr4 (21 HSPs)
chr4 (20-109)||(23292929-23293018)
chr4 (15-110)||(16073420-16073515)
chr4 (20-101)||(34306747-34306828)
chr4 (28-109)||(49431053-49431134)
chr4 (29-109)||(21945530-21945610)
chr4 (20-109)||(2361918-2362007)
chr4 (20-89)||(19312393-19312462)
chr4 (28-109)||(28964199-28964280)
chr4 (25-109)||(8423666-8423750)
chr4 (20-71)||(14465008-14465059)
chr4 (63-109)||(54580009-54580055)
chr4 (19-72)||(28084588-28084641)
chr4 (40-109)||(40179599-40179668)
chr4 (13-52)||(18513171-18513210)
chr4 (14-56)||(3064865-3064907)
chr4 (15-52)||(11596295-11596332)
chr4 (20-109)||(12895217-12895306)
chr4 (20-109)||(35157928-35158017)
chr4 (20-52)||(2054127-2054159)
chr4 (29-109)||(4157463-4157543)
chr4 (26-106)||(20950376-20950456)
[»] chr2 (28 HSPs)
chr2 (20-109)||(2438662-2438751)
chr2 (20-109)||(28596496-28596585)
chr2 (20-89)||(35056926-35056995)
chr2 (20-109)||(37559004-37559093)
chr2 (20-87)||(26769571-26769638)
chr2 (29-87)||(27084318-27084376)
chr2 (20-109)||(18840956-18841045)
chr2 (20-89)||(30717462-30717531)
chr2 (30-109)||(12224250-12224329)
chr2 (14-89)||(37419801-37419876)
chr2 (20-59)||(44635570-44635609)
chr2 (75-109)||(5367219-5367253)
chr2 (20-106)||(15972903-15972989)
chr2 (75-109)||(20242725-20242759)
chr2 (31-109)||(37411198-37411276)
chr2 (24-109)||(5040761-5040846)
chr2 (40-109)||(29176456-29176525)
chr2 (75-108)||(34691803-34691836)
chr2 (75-108)||(34714215-34714248)
chr2 (20-109)||(34993925-34994014)
chr2 (20-109)||(38117102-38117191)
chr2 (77-110)||(44860346-44860379)
chr2 (20-52)||(11223796-11223828)
chr2 (77-109)||(12668423-12668455)
chr2 (77-109)||(18622633-18622665)
chr2 (20-52)||(34691772-34691804)
chr2 (20-52)||(34714184-34714216)
chr2 (77-109)||(36756344-36756376)
[»] scaffold0652 (1 HSPs)
scaffold0652 (20-106)||(405-491)
[»] scaffold0475 (1 HSPs)
scaffold0475 (20-106)||(3338-3424)
[»] scaffold0050 (1 HSPs)
scaffold0050 (20-109)||(70305-70394)
[»] scaffold0512 (1 HSPs)
scaffold0512 (20-99)||(4979-5058)
[»] scaffold0008 (1 HSPs)
scaffold0008 (20-89)||(263304-263373)
[»] scaffold0361 (1 HSPs)
scaffold0361 (20-109)||(14557-14643)
[»] scaffold0083 (1 HSPs)
scaffold0083 (63-109)||(45516-45562)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-89)||(241652-241721)
[»] scaffold0171 (1 HSPs)
scaffold0171 (77-109)||(23447-23479)
[»] scaffold0086 (1 HSPs)
scaffold0086 (25-89)||(2986-3050)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 11738145 - 11738432
Alignment:
Q  11 cagaacctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatgc 110  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  11738145 cagaacctatgaaacacggacactcctctgattaggcgtgtctcagtgtggaacacgtctcatttccgacagcgacacgtataattacactgaattatgc 11738244  T
Q  111 acacnnnnnnnn---ttattaaccccttaattatgaattgttgaattgaattgtaggatttgtggacccatctggaatatgttgtgggtatcatgaagat 207  Q
    | |            ||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| ||    
T  11738245 aaaaaaaaaaatatattattaaccccttaactatgaattgttgaattgaattgtaggatttgttgatccttctggaatatgttgtgggtatcatgaaaat 11738344  T
Q  208 ggataccatgtttattgtggaaataaagcaacgattaatggtaaagaaatagttgctagttcttgtgaagatccttcaaagtacatta 295  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  11738345 ggataccatgtttattgtgggaataaagcaacgattaatggtaaagaaattgttacaagttcttgtgaagatccttcaaagtacatta 11738432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 11744779 - 11744938
Alignment:
Q  136 aattatgaattgttgaattgaattgtaggatttgtggacccatctggaatatgttgtgggtatcatgaagatggataccatgtttattgtggaaataaag 235  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11744779 aattatgaattgttgaattgaattgtaggatttgttaacccttctggaatatgttgtgggtatcatgaagatggataccatgtttattgtggaaataaag 11744878  T
Q  236 caacgattaatggtaaagaaatagttgctagttcttgtgaagatccttcaaagtacatta 295  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11744879 caatgattaatggtaaagaaatagttgctagttcttgtgaagatccttcaaagtacatta 11744938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 15680925 - 15680836
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| ||||||||||||||  ||||| |||||||| |||| | ||||||||| | |||||||||||||| |||||||||||| |||||||    
T  15680925 tgaagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactaaattatg 15680836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 20549907 - 20549820
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaatta 107  Q
    |||| ||||| |||||||| |||||||||||||||| ||| | ||| ||||  | |||||||||||||| ||||||||||||||||||    
T  20549907 tgaagcacgggcactcctcggattaggcgtgtctcattgtcggacatgtgttgtgtccgacaccgacacatataattacactgaatta 20549820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 32287406 - 32287495
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||||||| ||||| | |||| | |||| |||||| |||||||||||||| |||| || ||||||||||||    
T  32287406 tgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacttgtcatgtccgacaccgacacatatacttgcactgaattatg 32287495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 33994333 - 33994239
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| ||||||||| ||||||||  ||||||||||||||| |||| | ||| ||||| | || ||||||||||| | ||||| ||||||||||||    
T  33994333 acctatgaaacacgaacactccttggattaggcgtgtctcggtgttggacatgtgtcgtgtctgacaccgacacttgtaattgcactgaattatg 33994239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 21880268 - 21880179
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||| ||| |||||||||||||   |||| | ||| ||||| | |||||||||||||| | ||||||||||||||||||    
T  21880268 tgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatg 21880179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 5409767 - 5409836
Alignment:
Q  13 gaacctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacac 82  Q
    |||||| |||| |||||||||||||| ||||||||||||| | |||| | ||||||||| | ||||||||    
T  5409767 gaacctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 5409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 26033393 - 26033462
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    ||||||||||||||||||| ||||||| ||||| | || | | ||||||||||| || ||||||||||||    
T  26033393 tgaaacacggacactcctcggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgacacg 26033462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 598324 - 598245
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattaca 99  Q
    |||| |||||||||| ||| ||||||||||||| | |||| | ||||||||| | || ||||||||||| || |||||||    
T  598324 tgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattaca 598245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 22484141 - 22484050
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatgca 111  Q
    |||| |||||||||| ||| ||| || | ||||||  ||| | ||| ||||||| || ||||||||||| |||||||| |||||||||||||    
T  22484141 tgaagcacggacacttctcggatcagacatgtctcgatgtcggacatgtgtcatgtctgacaccgacacatataattatactgaattatgca 22484050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 2334376 - 2334314
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacac 82  Q
    ||||||||||||||||||| |||||| ||||| ||||||| | ||| ||||| | ||||||||    
T  2334376 tgaaacacggacactcctcggattagacgtgtttcagtgtcggacatgtgtcgtgtccgacac 2334314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 5835320 - 5835274
Alignment:
Q  63 acacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||| || ||||||||||| ||||||||||||||||||||    
T  5835320 acacatgtcatgtctgacaccgacacatataattacactgaattatg 5835274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 6028740 - 6028683
Alignment:
Q  32 actcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| ||||||||||||||||||||||| |||| |||||| | | |||||| ||||||    
T  6028740 actcttcagattaggcgtgtctcagtgtcgaactcgtgtcgtgttcgacactgacacg 6028683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 8234242 - 8234173
Alignment:
Q  40 gattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||||||||||| |||| | ||| ||||| | |||||||||| ||| | ||| ||||||||||||||    
T  8234242 gattaggcgtgtctcggtgtcggacatgtgtcgtgtccgacaccggcacttgtaactacactgaattatg 8234173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 24339769 - 24339700
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| ||||| |||||||| ||||||||||||| | |||| | | ||||||| | |||||||||||||||    
T  24339769 tgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacg 24339700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 17852116 - 17852056
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgac 80  Q
    |||| ||||||||||||||  |||||| ||||||| |||| | ||||||||||| ||||||    
T  17852116 tgaagcacggacactcctcgaattaggtgtgtctcggtgtcggacacgtgtcatgtccgac 17852056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 22602710 - 22602742
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||| ||||||||||||||||||||    
T  22602710 cgacaccgacacatataattacactgaattatg 22602742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 24289905 - 24289869
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgt 51  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  24289905 acctatgaaacacggacactcctcagattaggagtgt 24289869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 40332312 - 40332218
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||||||||||||| ||||||||| ||| | |||||| ||||||||| | ||| |||||||||| | ||||||||||||||||||    
T  40332312 acctgtgaaacacggacactcctcggattaggcgcgtcccggtgtgggacacgtgtcgtgtcccacaccgacacttgtaattacactgaattatg 40332218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 3025667 - 3025578
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| |||||| |||||| ||||||   ||||||||| | |||||||| ||||| ||||||||||||||||||||    
T  3025667 tgaagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacactgacacctataattacactgaattatg 3025578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 18407840 - 18407746
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||| ||||||||||||||  ||||||||||||  ||||| | ||| ||||| | |||| || |||||| | ||||||||||||||||||    
T  18407840 acctatgaagcacggacactcctccaattaggcgtgtcctagtgtcggacatgtgtcgtgtccggcagcgacacttgtaattacactgaattatg 18407746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 4298841 - 4298918
Alignment:
Q  29 gacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||||||||||||| | |||| ||||||||||||  || ||||||||||| | |||||||| | |||||||    
T  4298841 gacactcctcagattaggcgtgtc-ccgtgtcgaacacgtgtca--tctgacaccgacacttgtaattacattaaattatg 4298918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 14134815 - 14134726
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||||||||  ||||||||||||   |||  | ||||||||| | |  ||||||||||  ||||||||||||||||||||    
T  14134815 tgaaacacggacactcctcgaattaggcgtgtcctggtgacggacacgtgtcgtgtttgacaccgacatatataattacactgaattatg 14134726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 926731 - 926815
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaa 104  Q
    |||| |||||||||||||| ||| | || |||| | |||| | |||||||||   |||||||||||||| |||||||||||||||    
T  926731 tgaagcacggacactcctcggataaagcatgtcccggtgtcggacacgtgtcgcgtccgacaccgacacttataattacactgaa 926815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 4786322 - 4786370
Alignment:
Q  61 gaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||| |||| | |||||||||||||| ||||||||||||||||||||    
T  4786322 gaacacatgtcgtatccgacaccgacacatataattacactgaattatg 4786370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 5813703 - 5813627
Alignment:
Q  25 cacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacact 101  Q
    ||||||||||||||  |||||||||||| | |||| | ||||||||| | |||||||||||||| | || |||||||    
T  5813703 cacggacactcctccaattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtatttacact 5813627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 126295 - 126369
Alignment:
Q  25 cacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattaca 99  Q
    |||||||||||||| |||||| |||||| | || | | ||||||||| | |||||||| ||||| ||||||||||    
T  126295 cacggacactcctcggattagccgtgtcccggtattggacacgtgtcgtgtccgacactgacacatataattaca 126369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 29510230 - 29510304
Alignment:
Q  14 aacctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacac 88  Q
    ||||| |||| |||||||||||||| ||||||| ||||| | |||| | ||||| ||| | ||||||||||||||    
T  29510230 aacctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacac 29510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 36450697 - 36450783
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaatt 106  Q
    |||| ||| |||||||||| |||||||||||||   |||| | ||||| ||| | ||||||||| |||| | |||||||||||||||    
T  36450697 tgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtccgacacctacacttgtaattacactgaatt 36450783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 21465539 - 21465470
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| ||||||||||||||| ||||||||| || | |||| | ||||||||| | |||||||| ||||||    
T  21465539 tgaagcacggacactcctcaaattaggcgtatccctgtgttggacacgtgtcgtgtccgacactgacacg 21465470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 22197679 - 22197736
Alignment:
Q  25 cacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacac 82  Q
    ||||||||||||||||||||||||||   | |||| | ||||||||||| ||||||||    
T  22197679 cacggacactcctcagattaggcgtgatccggtgtcggacacgtgtcatgtccgacac 22197736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 22652103 - 22652034
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| |||||||||||||| |||||| |||||| | |||| | |||| |||| | |||||||||||||||    
T  22652103 tgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacg 22652034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 31109466 - 31109547
Alignment:
Q  25 cacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaatt 106  Q
    |||||||||||||| ||||||||||||| ||||||   |||||   ||| |||||||| ||||| |||| ||| ||||||||    
T  31109466 cacggacactcctcggattaggcgtgtcccagtgtcatacacgacacatgtccgacactgacacatatagttagactgaatt 31109547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 8847315 - 8847283
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||| ||||||||||||||||||||    
T  8847315 cgacaccgacacatataattacactgaattatg 8847283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 11927086 - 11927118
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||| ||||||||||||||||||||    
T  11927086 cgacaccgacacatataattacactgaattatg 11927118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 15023208 - 15023288
Alignment:
Q  28 ggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattat 108  Q
    ||||||||||| |||||| |||||  |||  | | ||||||||| | ||||||| |||||| | |||||||||||||||||    
T  15023208 ggacactcctcggattagacgtgttccagcatcggacacgtgtcgtatccgacatcgacacttgtaattacactgaattat 15023288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 26902175 - 26902207
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||| ||||||||||||||||||||    
T  26902175 cgacaccgacacatataattacactgaattatg 26902207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 37598947 - 37598861
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaatt 106  Q
    |||| |||||||||||||| ||||||||||||| || ||| | ||||||||| | |||||||||||||| |||||||||||||||||    
T  37598947 tgaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaatt 37598861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 1815373 - 1815284
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| ||||| |||||||||||||||||||||| | |||| | ||| ||||| | || ||||||||||| | ||||||||||||||||||    
T  1815373 tgaatcacggtcactcctcagattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaattatg 1815284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 18337445 - 18337356
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||| |||| |||| |||||| | ||||||||  | |||||||||||||| | ||||||||||||||||||    
T  18337445 tgaagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatg 18337356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 22515830 - 22515919
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||||||||||||||| |||| | | | ||||| | |||||||||||||| | |||||||||| |||||||    
T  22515830 tgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattacactaaattatg 22515919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 5898214 - 5898298
Alignment:
Q  25 cacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||| |||||| |||||| | |||| | ||||||||| | || ||||||||| | ||||||||||||||||||||    
T  5898214 cacggacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaattatg 5898298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 46348326 - 46348414
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattat 108  Q
    |||| ||||||||| |||| ||| ||||||||||| |||| | ||||||||| | |||||||||||||| | |||||||||| ||||||    
T  46348326 tgaagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattat 46348414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 51410147 - 51410052
Alignment:
Q  14 aacctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||| |||| |||| | ||||||  ||||||||||||||| |||| | | ||||||| | |||||||||||||| | ||||||||||||||||||    
T  51410147 aacctatgaagcacgaatactccttggattaggcgtgtctcggtgtcggatacgtgtcgtgtccgacaccgacacttgtaattacactgaattatg 51410052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 7353455 - 7353525
Alignment:
Q  40 gattaggcgtgtctcagtgt-ggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||||||||| |||| ||||||||| | |||||||||||  |||||||||||| |||||||    
T  7353455 gattaggcgtgtctcagtgtcggaaaacgtgtcatgttcgacaccgacatatataattacactaaattatg 7353525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 40181976 - 40181898
Alignment:
Q  31 cactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||| ||||||||||||| | |||| | ||||||||  | ||||||||||| || ||||||||||||||||||||    
T  40181976 cactcctcggattaggcgtgtcccggtgtaggacacgtgttgtgtccgacaccgatacatataattacactgaattatg 40181898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 42359392 - 42359478
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaatt 106  Q
    |||| |||||||||||||| ||||||||||||| | |||| | ||||  ||| | |||||||||||||| | |||||||||||||||    
T  42359392 tgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacacgtcttgtccgacaccgacacttgtaattacactgaatt 42359478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 1486647 - 1486741
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttc-----cgacaccgacacgtataattacactgaattatg 109  Q
    |||| ||| |||||||||| ||||||||||||| | |||| | ||||||||| | ||     |||||||||||| ||||||||||||||||||||    
T  1486647 tgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacactgaattatg 1486741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 38078616 - 38078693
Alignment:
Q  32 actcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||| |||||||||||||   |||| ||||| ||||| | |||||||||||||| | |||||||| |||||||||    
T  38078616 actcctcggattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaattatg 38078693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 40258884 - 40258965
Alignment:
Q  28 ggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||||||| |||||||||||||   |||| | ||| ||||| | || ||||||||||| | ||||||||||||||||||    
T  40258884 ggacactcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatg 40258965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 21038206 - 21038163
Alignment:
Q  16 cctgtgaaacacggacactcctcagattaggcgtgtctcagtgt 59  Q
    |||||||| ||| ||||||| |||||||||||||||||||||||    
T  21038206 cctgtgaagcacagacactcatcagattaggcgtgtctcagtgt 21038163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 28674897 - 28674827
Alignment:
Q  39 agattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||||||||||||||||| | ||| ||||| | || |||||| |||  |||||||| |||||||||||    
T  28674897 agattaggcgtgtctcagtgttggacaagtgtcgtgtctgacaccaacatatataattatactgaattatg 28674827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 30749901 - 30749867
Alignment:
Q  75 tccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  30749901 tccgacaccgacacatataattacactgaattatg 30749867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 30771352 - 30771318
Alignment:
Q  75 tccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  30771352 tccgacaccgacacatataattacactgaattatg 30771318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 40917881 - 40917807
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| |||| |||||||| ||||| ||||||||||||| | |||| | ||||||||| | ||| |||||||||||    
T  40917881 acctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacg 40917807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 6427591 - 6427522
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| ||||||||||| |||||||||||||||| | |||| | ||||||||| | |||||| || |||||    
T  6427591 tgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacgcctacacg 6427522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 31694642 - 31694711
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| |||||||||||||||||||||||||||  | |||| ||| | ||||  | |||||||||||||||    
T  31694642 tgaagcacggacactcctcagattaggcgtgttccggtgtcgaatatgtgttgtgtccgacaccgacacg 31694711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 52903310 - 52903277
Alignment:
Q  75 tccgacaccgacacgtataattacactgaattat 108  Q
    |||||||||||||| |||||||||||||||||||    
T  52903310 tccgacaccgacacatataattacactgaattat 52903277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 2218344 - 2218312
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtc 52  Q
    |||| ||||||||||||||||||||||||||||    
T  2218344 tgaagcacggacactcctcagattaggcgtgtc 2218312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 5927283 - 5927371
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattat 108  Q
    |||| ||||||||||||||||||||||| ||| ||  ||| | |||  |||||| |||||||| ||||| | |||||||| | ||||||    
T  5927283 tgaagcacggacactcctcagattaggcatgtttcgatgtcggacatttgtcatgtccgacactgacacttgtaattacattaaattat 5927371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 5944342 - 5944310
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||| ||||||||||||||||||||    
T  5944342 cgacaccgacacttataattacactgaattatg 5944310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 16812672 - 16812640
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtc 52  Q
    |||| ||||||||||||||||||||||||||||    
T  16812672 tgaagcacggacactcctcagattaggcgtgtc 16812640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 21365990 - 21366034
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgtctcagtgt 59  Q
    |||| |||| |||||||||||||| ||||||||||||||| ||||    
T  21365990 acctatgaagcacggacactcctcggattaggcgtgtctcggtgt 21366034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 24334703 - 24334739
Alignment:
Q  75 tccgacaccgacacgtataattacactgaattatgca 111  Q
    |||||||||||||| | ||||||||||||||||||||    
T  24334703 tccgacaccgacacttgtaattacactgaattatgca 24334739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 26830698 - 26830615
Alignment:
Q  25 cacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||| ||||||||||||| | || | ||||||||||  | || |||| |||||| |||||||||| | |||||||    
T  26830698 cacggacactcctctgattaggcgtgtcccggtatcgaacacgtgtagtgtctgaca-cgacacttataattacatttaattatg 26830615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 32461396 - 32461464
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacac 88  Q
    |||| |||||||||| ||  ||||||||||||| ||||||   ||||||||| | ||||||||||||||    
T  32461396 tgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacac 32461464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 34371772 - 34371740
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||| ||||||||||||||||||||    
T  34371772 cgacaccgacacatataattacactgaattatg 34371740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 39130730 - 39130798
Alignment:
Q  40 gattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattat 108  Q
    ||||| ||||||| || ||| || |||||||  | |||||||||||||| |||||||||||| ||||||    
T  39130730 gattaagcgtgtcccaatgtcgagcacgtgttgtgtccgacaccgacacatataattacactaaattat 39130798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 44482289 - 44482257
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||| ||||||||||||||||||||    
T  44482289 cgacaccgacacatataattacactgaattatg 44482257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 55401191 - 55401102
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||||||||||||||| |||| | ||||||||| | |||||||||||||| | |||||||||| |||||||    
T  55401191 tgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatg 55401102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 40993273 - 40993367
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||| || ||||||||||| ||||||||||||| | |||| | ||| ||||| | |||||||||||||| ||||||||||||||||||||    
T  40993273 acctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattatg 40993367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 18427065 - 18426976
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||||||||||||||||||||||| ||||| | |||  | ||||||||| | |||||||||||||  ||||||||||| ||||||||    
T  18427065 tgaaacacggacactcctcagattaggtgtgtcccggtgccggacacgtgtcgtatccgacaccgacatatataattacaccgaattatg 18426976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 10955056 - 10954979
Alignment:
Q  32 actcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||| ||||||||||||| |||||| | ||||||||| | |||||||||||||| | | ||||||||||||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaattatg 10954979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 35223054 - 35222965
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||| | ||||||| | ||||   ||||||||||| |||||||||||||| |||||||||| |||||||||    
T  35223054 tgaagcacggacactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtccgacaccgacacatataattacattgaattatg 35222965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 20503581 - 20503492
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||||||||||||| | ||||   ||| ||||| | ||| |||||||||| | ||||||||||||||||||    
T  20503581 tgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatg 20503492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 28918111 - 28918028
Alignment:
Q  28 ggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttcc--gacaccgacacgtataattacactgaattatg 109  Q
    ||||||||||  ||||||||||||| |||||| | ||||||||| | |||  ||||||||||| | ||||||||||||||||||    
T  28918111 ggacactccttggattaggcgtgtcccagtgtcggacacgtgtcgtgtccacgacaccgacacttgtaattacactgaattatg 28918028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 13845468 - 13845550
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactg 102  Q
    |||| |||||||||||||  ||| ||||||||||| ||||   |||||| || | |||||||||||||| |||||||||||||    
T  13845468 tgaagcacggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtccgacaccgacacatataattacactg 13845550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 41961577 - 41961651
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| |||| |||||||||| ||| ||||||||||||| |||||| | ||||||||| | ||||| |||||||||    
T  41961577 acctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacg 41961651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 8842445 - 8842356
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| |||||||||||||||| | |  |||| ||||| | || ||||||||||  |||||||||||  |||||||    
T  8842445 tgaagcacggacactcctcggattaggcgtgtctcaatatctaacatgtgtcgtgtctgacaccgacatatataattacaccaaattatg 8842356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 3631795 - 3631711
Alignment:
Q  25 cacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||| || ||||||||||   |||| | ||| ||||| | |||||||| | ||| ||||||||||||||||||||    
T  3631795 cacggacactcctcggactaggcgtgtcctggtgtcggacatgtgtcgtgtccgacactggcacatataattacactgaattatg 3631711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 4987229 - 4987293
Alignment:
Q  26 acggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgt 90  Q
    ||||||||||||| ||||||||||||| | |||| | ||||||||| | ||| ||||||||||||    
T  4987229 acggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgt 4987293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 7171607 - 7171529
Alignment:
Q  30 acactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattat 108  Q
    ||||||||  ||||||||||||| | |||| | ||||||||| | ||||||||| |||| | ||||||||| |||||||    
T  7171607 acactccttggattaggcgtgtcgcggtgtcggacacgtgtcgtgtccgacaccaacacttgtaattacaccgaattat 7171529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 7928511 - 7928477
Alignment:
Q  75 tccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  7928511 tccgacaccgacacatataattacactgaattatg 7928477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 34307738 - 34307812
Alignment:
Q  40 gattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg-----tataattacactgaattatg 109  Q
    |||||||||||||||||| | ||| ||||||| | |||||||||||||||     ||||||||||||||| ||||    
T  34307738 gattaggcgtgtctcagtatcgaagacgtgtcgtgtccgacaccgacacgacacttataattacactgaaatatg 34307812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 8383318 - 8383285
Alignment:
Q  75 tccgacaccgacacgtataattacactgaattat 108  Q
    |||||||||||||| |||||||||||||||||||    
T  8383318 tccgacaccgacacttataattacactgaattat 8383285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 25093613 - 25093532
Alignment:
Q  25 cacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaatt 106  Q
    |||| |||||| |||||||||  |||  ||||||| | ||| ||||  | |||||||||||||| |||||||||||||||||    
T  25093613 cacgaacactcttcagattagaagtgcttcagtgtcggacatgtgttgtgtccgacaccgacacatataattacactgaatt 25093532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 11610625 - 11610593
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtc 52  Q
    |||| ||||||||||||||||||||||||||||    
T  11610625 tgaagcacggacactcctcagattaggcgtgtc 11610593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 8914 - 8833
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacact 101  Q
    |||| |||||| ||||||||||||||||||||||| |||| | ||||||||| | |||||||||||||| | ||||||||||    
T  8914 tgaagcacggagactcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacact 8833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 17841532 - 17841621
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| |||||||||||||||||||| | |||| |||| | |||||||||| ||| | |||||||||| |||||||    
T  17841532 tgaagcacggacactcctcggattaggcgtgtctcagtgtcggacacatgtcgtgtccgacaccgtcacttgtaattacactaaattatg 17841621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 28715416 - 28715322
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||| |||| ||||| |||  |||||||||||| | |||| ||||||||||| | |||||||||||||| | ||||||||||||||||||    
T  28715416 acctatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatg 28715322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 28152214 - 28152125
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||| ||||||||| |||||||| |||| | |||| | ||||||||| | |||||||||||||| | ||||||||||||||||||    
T  28152214 tgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatg 28152125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 34595250 - 34595161
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||||||| ||||| | ||||   ||||||||| | |||||||||||||| | ||||||||||||||||||    
T  34595250 tgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatg 34595161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 10339052 - 10339126
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| |||| |||||||||||||| ||||||||||||| |||||| | ||| ||||| | |||||||||||||||    
T  10339052 acctatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgacacg 10339126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 29021008 - 29020938
Alignment:
Q  40 gattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatgc 110  Q
    ||||||||||| ||| |||| ||||||||||| | ||||||||  |||| |||||||||||||||||||||    
T  29021008 gattaggcgtgcctcggtgtcgaacacgtgtcgtgtccgacacaaacacctataattacactgaattatgc 29020938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 8365445 - 8365520
Alignment:
Q  14 aacctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    ||||| |||| |||||| ||||||| ||||||||||||| |||||| | ||||||||| | ||||| |||||||||    
T  8365445 aacctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacg 8365520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 4878063 - 4877970
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||| |||||||||||||| ||||||||||||| | |||| | ||| ||||| | |||||||||||||| | |||||| ||| |||||||    
T  4878063 acctatgaagcacggacactcctcggattaggcgtgtc-ctgtgtcggacatgtgtcgtgtccgacaccgacacttgtaattatacttaattatg 4877970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 32978841 - 32978931
Alignment:
Q  19 gtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||| |||||||||||||  |||||| |||||| | |||| | ||| ||||| | |||||||||||||| | |||||||||| |||||||    
T  32978841 gtgaagcacggacactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacacttaattatg 32978931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 7378095 - 7378006
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||| |||||||||| |||||| | |||| | |  | |||| | |||||||||||||| |||||||||| |||||||||    
T  7378095 tgaagcacggacacttctcagattagccgtgtcccggtgtcggatgcatgtcgtgtccgacaccgacacatataattacattgaattatg 7378006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 7265591 - 7265625
Alignment:
Q  75 tccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  7265591 tccgacaccgacacatataattacactgaattatg 7265625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 6898224 - 6898313
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||| |||||| || |||||||||||| || |||| | |||||  || | |||||||||||||| | |||||||||| |||||||    
T  6898224 tgaagcacgaacactcatcggattaggcgtgtttcggtgttggacacgcttcgtgtccgacaccgacacttgtaattacacttaattatg 6898313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 8776905 - 8776962
Alignment:
Q  14 aacctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtc 71  Q
    ||||| |||| |||||||||||||| ||||||| ||||||| |||| | |||||||||    
T  8776905 aacctatgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacgtgtc 8776962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 17435320 - 17435259
Alignment:
Q  26 acggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgaca 87  Q
    |||||||||  ||||||||| |||||| |||||| ||||||||||| | ||||||| |||||    
T  17435320 acggacacttttcagattagacgtgtcccagtgtcgaacacgtgtcgtgtccgacatcgaca 17435259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 19040448 - 19040379
Alignment:
Q  40 gattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||| ||||| ||  || ||||| ||||| | |||||||| ||||| ||||||||||||||||||||    
T  19040448 gattaggtgtgtcccaaagttgaacatgtgtcgtgtccgacacagacacatataattacactgaattatg 19040379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 21924933 - 21924966
Alignment:
Q  75 tccgacaccgacacgtataattacactgaattat 108  Q
    |||||||||||||| |||||||||||||||||||    
T  21924933 tccgacaccgacacatataattacactgaattat 21924966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 426481 - 426513
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtc 52  Q
    |||| ||||||||||||||||||||||||||||    
T  426481 tgaagcacggacactcctcagattaggcgtgtc 426513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 7027301 - 7027269
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||| ||||||||||||||||||||    
T  7027301 cgacaccgacacatataattacactgaattatg 7027269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 9025494 - 9025526
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||| ||||||||||||||||||||    
T  9025494 cgacaccgacacatataattacactgaattatg 9025526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 23771686 - 23771610
Alignment:
Q  28 ggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaa 104  Q
    |||||||| |||| |||| |||||||| |||| | |||| |||| | |||||||||||||  | |||||||||||||    
T  23771686 ggacactcttcaggttagacgtgtctctgtgtcggacacatgtcgtgtccgacaccgacatttgtaattacactgaa 23771610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 21576688 - 21576777
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||||||||||||| ||||||   ||||||||| | ||||||| |||||| | ||||||||||||||||||    
T  21576688 tgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaattatg 21576777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 21190999 - 21191088
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||||||||||||| | | || | ||||||||  | |||||||||||||| | ||||||||||||||||||    
T  21190999 tgaagcacggacactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatg 21191088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 43565002 - 43564908
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||| |||||||||| ||| ||||||||||||| | | || | |||| |||| | |||||||||||||| |||||||||||| |||||||    
T  43565002 acctatgaagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttataattacactaaattatg 43564908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 30502351 - 30502418
Alignment:
Q  40 gattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaatta 107  Q
    |||||||| |||| |||||| | ||| ||||| | |||||||||||||| ||||||||||||||||||    
T  30502351 gattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaatta 30502418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 30542694 - 30542761
Alignment:
Q  40 gattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaatta 107  Q
    |||||||| |||| |||||| | ||| ||||| | |||||||||||||| ||||||||||||||||||    
T  30542694 gattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaatta 30542761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 30098986 - 30099071
Alignment:
Q  25 cacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatgc 110  Q
    |||| ||||||||  ||| ||||||||| | ||||   ||||||||| | |||||||||||||| ||||||||||| |||||||||    
T  30098986 cacgaacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccgacaccgacacatataattacacagaattatgc 30099071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 39268540 - 39268609
Alignment:
Q  19 gtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacac 88  Q
    ||||| |||||||||||||| ||||||||||||| |||||| | |||| |||| | ||| ||||||||||    
T  39268540 gtgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacatgtcgtgtccaacaccgacac 39268609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 39698668 - 39698599
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| |||||||||||||| ||||||||||||||| |||| | | || |||| | |||||||||||||||    
T  39698668 tgaagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacacg 39698599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 28588672 - 28588706
Alignment:
Q  75 tccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  28588672 tccgacaccgacacctataattacactgaattatg 28588706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 31084444 - 31084382
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacac 82  Q
    |||| |||||||||||||| |||||||| |||| |||||| | ||||||||| | ||||||||    
T  31084444 tgaaccacggacactcctcggattaggcatgtcccagtgtcggacacgtgtcgtgtccgacac 31084382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 32766875 - 32766944
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| ||||||||||||||||||||| ||| ||   |||| | ||||||||| ||| |||||||||||||    
T  32766875 tgaagcacggacactcctcagattagacgtatcctggtgtcggacacgtgtcgttttcgacaccgacacg 32766944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 42893468 - 42893387
Alignment:
Q  28 ggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||| ||||||||||||   |||| | ||||||||  | || ||||||||||| | ||||||||||| ||||||    
T  42893468 ggacactcctcatattaggcgtgtcctggtgtcggacacgtgttgtgtctgacaccgacacttgtaattacactggattatg 42893387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 42029863 - 42029779
Alignment:
Q  25 cacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||| ||| ||||||||||  |||    ||| ||||| | ||||||||||| || |||||||||| |||||||||    
T  42029863 cacggacactcctcggataaggcgtgtctacgtgacagacatgtgtcgtgtccgacaccgatacatataattacattgaattatg 42029779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 23292929 - 23293018
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||||||||||||| | |||| | ||||||||| | |||||||||||||| | |||||| |||||||||||    
T  23292929 tgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaattatg 23293018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 16073515 - 16073420
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatgc 110  Q
    |||| |||| || ||||||||||| |||||||||||||| ||||| | ||| || || | |||||||||||||| | |||||||||||||||||||    
T  16073515 acctatgaagcatggacactcctcggattaggcgtgtcttagtgtcggacatgtatcgtgtccgacaccgacacttgtaattacactgaattatgc 16073420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 34306747 - 34306828
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacact 101  Q
    |||| |||| ||| ||||||||||||||||||||| |||| | ||||||||| | |||||||||||||| | ||||||||||    
T  34306747 tgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacact 34306828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 49431134 - 49431053
Alignment:
Q  28 ggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||||||| ||| ||||||||| | |||| | ||||||||| | |||||||||||||| | ||||||||||||||||||    
T  49431134 ggacactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaattatg 49431053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 21945610 - 21945530
Alignment:
Q  29 gacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||| ||||||||||||  | |||| | ||| ||||||| |||||||||||||| | ||||||||||||||||||    
T  21945610 gacactcctcggattaggcgtgttgcggtgtcggacatgtgtcatgtccgacaccgacacttgtaattacactgaattatg 21945530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 2361918 - 2362007
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| ||||||||||| |||||||||| ||||||| ||||   ||||| ||| | |||||||||||||| | |||||||||| |||||||    
T  2361918 tgaagcacggacactcgtcagattaggtgtgtctcggtgtcagacacgagtcgtgtccgacaccgacacttttaattacactaaattatg 2362007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 19312462 - 19312393
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    ||||||||||||||| |||||||||| |||||||| |||| | ||||||||| | ||||||| |||||||    
T  19312462 tgaaacacggacacttctcagattagacgtgtctcggtgtcggacacgtgtcgtatccgacaacgacacg 19312393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 28964199 - 28964280
Alignment:
Q  28 ggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||||||| ||||||||||||| |||||| | | | ||||| | |||||||| ||||| | ||||||||||||||||||    
T  28964199 ggacactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaattatg 28964280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 8423666 - 8423750
Alignment:
Q  25 cacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||| ||| ||||||||||||| | |||| | |||  |||| | |||||||||||||  ||||||||||||||||||||    
T  8423666 cacggacacttctccgattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactgaattatg 8423750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 14465008 - 14465059
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtc 71  Q
    |||| ||||||||||||||||||||| |||||| |||||| |||||||||||    
T  14465008 tgaagcacggacactcctcagattagacgtgtcccagtgtcgaacacgtgtc 14465059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 54580009 - 54580055
Alignment:
Q  63 acacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||||| | |||||||||||||| ||||||||||||||||||||    
T  54580009 acacgtgtcgtgtccgacaccgacacttataattacactgaattatg 54580055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 28084641 - 28084588
Alignment:
Q  19 gtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtca 72  Q
    ||||| |||||||||||||| ||||||||||||| |||||| | ||||||||||    
T  28084641 gtgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtca 28084588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 40179599 - 40179668
Alignment:
Q  40 gattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||   |||| ||||| ||||| | |||||||||||| | ||||||||||||||||||||    
T  40179599 gattaggcgtgtcatggtgtcgaacatgtgtcgtgtccgacaccgacgcatataattacactgaattatg 40179668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 18513171 - 18513210
Alignment:
Q  13 gaacctgtgaaacacggacactcctcagattaggcgtgtc 52  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  18513171 gaacctatgaagcacggacactcctcagattaggcgtgtc 18513210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 3064865 - 3064907
Alignment:
Q  14 aacctgtgaaacacggacactcctcagattaggcgtgtctcag 56  Q
    ||||| |||| |||||||||||||| |||||||||||||||||    
T  3064865 aacctatgaagcacggacactcctcggattaggcgtgtctcag 3064907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 11596295 - 11596332
Alignment:
Q  15 acctgtgaaacacggacactcctcagattaggcgtgtc 52  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  11596295 acctatgaagcacggacactcctcagattaggcgtgtc 11596332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 12895217 - 12895306
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||| ||||||||| ||||||||||||| |  ||| | | || |||| | |||||||||||||| |||||||||||  |||||||    
T  12895217 tgaagcacgaacactcctcggattaggcgtgtcccgatgtcggatacatgtcgtgtccgacaccgacacttataattacacaaaattatg 12895306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 35157928 - 35158017
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||| ||| ||||| ||||||  | |||| | ||| ||||| | || ||||||||||| |||||||||||| |||||||    
T  35157928 tgaagcacggacacttctcggattaagcgtgttccggtgttggacatgtgtcgtgtcagacaccgacacttataattacactaaattatg 35158017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 2054159 - 2054127
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtc 52  Q
    |||||||||||||||| ||||||||||||||||    
T  2054159 tgaaacacggacactcttcagattaggcgtgtc 2054127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 4157543 - 4157463
Alignment:
Q  29 gacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||||||  ||||||||| |||| |||| | ||| ||||| | |||||||||||||| | ||||| |||| |||||||    
T  4157543 gacactcctcgaattaggcgtttctcggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattgcactaaattatg 4157463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 20950376 - 20950456
Alignment:
Q  26 acggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaatt 106  Q
    |||| |||||||  ||||| |||||| || |||| ||||| || || | || ||||||||||| |||||||||||||||||    
T  20950376 acgggcactccttggattatgcgtgtttctgtgttgaacatgtatcgtgtctgacaccgacacatataattacactgaatt 20950456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 2438662 - 2438751
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||||||||||||| | |||| | ||| ||||| | |||||||||||||| | ||||||||||||||||||    
T  2438662 tgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatg 2438751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 28596585 - 28596496
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||||||| |||||  ||||| | ||||||||| | |||||||||||||| |||||||||||||| |||||    
T  28596585 tgaagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgacttatg 28596496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 35056995 - 35056926
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| ||||||||||||||||||||||||||| || |||| | ||||||||| | |||||||||||||||    
T  35056995 tgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacg 35056926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 37559093 - 37559004
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||||| ||||||  | |||| | ||||||||||  |||||||||||||| | |||||||| |||||||||    
T  37559093 tgaagcacggacactcctcggattaagcgtgtaccggtgtcggacacgtgtcaagtccgacaccgacacttgtaattacattgaattatg 37559004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 26769638 - 26769571
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgaca 87  Q
    |||| |||||||||||||| ||||||||||||| |||||| | ||||||||| | ||||| |||||||    
T  26769638 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgaca 26769571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 27084376 - 27084318
Alignment:
Q  29 gacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgaca 87  Q
    |||||||||| ||||||||||||||| |||| | ||||||||| | |||||||||||||    
T  27084376 gacactcctccgattaggcgtgtctcggtgttggacacgtgtcgtgtccgacaccgaca 27084318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 18840956 - 18841045
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||||||||||||| ||||||| ||||| | |||| | ||| ||||| | || ||||||||||| | |||||||||| |||||||    
T  18840956 tgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacacttaattatg 18841045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 30717462 - 30717531
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| |||||||||||||  |||||||||| || |||||| ||||||||||| | ||||||| |||||||    
T  30717462 tgaagcacggacactccttggattaggcgtatcccagtgtcgaacacgtgtcgtgtccgacaacgacacg 30717531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 12224329 - 12224250
Alignment:
Q  30 acactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||||  ||||||||||||| |||||| | |||||| || | |||||||||||||| | |||||||| || ||||||    
T  12224329 acactccttggattaggcgtgtcccagtgtcggacacgtatcgtgtccgacaccgacacttgtaattacattggattatg 12224250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 37419876 - 37419801
Alignment:
Q  14 aacctgtgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    ||||| |||| |||||||||||||| ||||||||||||| | |||| | |||||  || | |||||||||||||||    
T  37419876 aacctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacacg 37419801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 44635609 - 44635570
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgt 59  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  44635609 tgaagcacggacactcctcagattaggcgtgtctcggtgt 44635570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 5367253 - 5367219
Alignment:
Q  75 tccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  5367253 tccgacaccgacacatataattacactgaattatg 5367219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 15972989 - 15972903
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaatt 106  Q
    |||| |||||||| || || ||||||| ||||| | | || | ||||||||| | |||||||||||||| | |||||||||||||||    
T  15972989 tgaagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 15972903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 20242725 - 20242759
Alignment:
Q  75 tccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  20242725 tccgacaccgacacatataattacactgaattatg 20242759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 37411198 - 37411276
Alignment:
Q  31 cactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||||||| || |||||||||| |||||| | ||||| ||| | | ||||| |||||| |||||| |||||||||||||    
T  37411198 cactcctcggactaggcgtgtcccagtgtcggacacgcgtcgtgttcgacatcgacacatataatcacactgaattatg 37411276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 5040846 - 5040761
Alignment:
Q  24 acacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||||||||||  || |||||||||| | | || | |||| |||| | |||||||||||||| | |||||||| |||||||||    
T  5040846 acacggacactccttggactaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttgtaattacattgaattatg 5040761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 29176456 - 29176525
Alignment:
Q  40 gattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||| |||||||||||| | ||| ||| | | ||| ||||| |||| ||||||||||||||||||||    
T  29176456 gattaggtgtgtctcagtgtcggacatgtgccgtgtccaacaccaacacttataattacactgaattatg 29176525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 34691803 - 34691836
Alignment:
Q  75 tccgacaccgacacgtataattacactgaattat 108  Q
    |||||||||||||| |||||||||||||||||||    
T  34691803 tccgacaccgacacatataattacactgaattat 34691836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 34714215 - 34714248
Alignment:
Q  75 tccgacaccgacacgtataattacactgaattat 108  Q
    |||||||||||||| |||||||||||||||||||    
T  34714215 tccgacaccgacacatataattacactgaattat 34714248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 34993925 - 34994014
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||| ||||||||   |||||||||||| |||||| | |||| |||| | | |||||| ||||| |||||||||| |||||||||    
T  34993925 tgaagcacgaacactccttgaattaggcgtgtcccagtgtcggacacatgtcgtgttcgacactgacacatataattacattgaattatg 34994014  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 38117102 - 38117191
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| ||||||||| |||| ||||||||||||| | |||| | ||||||||  | ||||||||| |||| | ||||||||| ||| ||||    
T  38117102 tgaagcacggacacccctcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccaacacttgtaattacaccgaagtatg 38117191  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 44860379 - 44860346
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatgc 110  Q
    |||||||||||| |||||||||||||||||||||    
T  44860379 cgacaccgacacatataattacactgaattatgc 44860346  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 11223796 - 11223828
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtc 52  Q
    |||| ||||||||||||||||||||||||||||    
T  11223796 tgaagcacggacactcctcagattaggcgtgtc 11223828  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 12668423 - 12668455
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||| ||||||||||||||||||||    
T  12668423 cgacaccgacacttataattacactgaattatg 12668455  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 18622665 - 18622633
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatg 109  Q
    ||||||| |||||||||||||||||||||||||    
T  18622665 cgacaccaacacgtataattacactgaattatg 18622633  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 34691772 - 34691804
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtc 52  Q
    ||||||||||||||||||| |||||||||||||    
T  34691772 tgaaacacggacactcctcggattaggcgtgtc 34691804  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 34714184 - 34714216
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtc 52  Q
    ||||||||||||||||||| |||||||||||||    
T  34714184 tgaaacacggacactcctcggattaggcgtgtc 34714216  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 36756344 - 36756376
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||| ||||||||||||||||||||    
T  36756344 cgacaccgacacttataattacactgaattatg 36756376  T

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Target: scaffold0652 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 405 - 491
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaatt 106  Q
    |||| |||||||||||||| ||||||| ||||| | |||| | ||||| ||| | |||||||||||||| | |||||||||||||||    
T  405 tgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaatt 491  T

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Target: scaffold0475 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 3424 - 3338
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaatt 106  Q
    |||| |||||||||||||| ||||||||||||| ||||||  | |||||||| | |||||||| ||||| | |||||||||| ||||    
T  3424 tgaagcacggacactcctcggattaggcgtgtcccagtgtccaccacgtgtcttgtccgacactgacacttgtaattacacttaatt 3338  T

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Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 70394 - 70305
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||| |||||| || |||||||| ||||   |||| | ||||||||| | |||||||||||||| ||||||||||||||||||||    
T  70394 tgaagcacgaacactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaattatg 70305  T

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Target: scaffold0512 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 4979 - 5058
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattaca 99  Q
    |||| ||| |||||||||| |||||||| ||||||| ||| | ||||||||| | |||||||||||||| | ||||||||    
T  4979 tgaagcacagacactcctcggattaggcatgtctcaatgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 5058  T

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Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 263304 - 263373
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| |||||||||||||| ||||||||||||||  || | ||||||||||| | || ||||||||||||    
T  263304 tgaaccacggacactcctcggattaggcgtgtcttggtatcgaacacgtgtcgtgtctgacaccgacacg 263373  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 14643 - 14557
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    |||| |||| ||||||||  ||||||||||||||| |||| | ||||||||| | ||||||||   ||| | ||||||||||||||||||    
T  14643 tgaagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacac---cacttgtaattacactgaattatg 14557  T

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Target: scaffold0083 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 45516 - 45562
Alignment:
Q  63 acacgtgtcatttccgacaccgacacgtataattacactgaattatg 109  Q
    ||||||||| | |||||||||||||| | ||||||||||||||||||    
T  45516 acacgtgtcgtgtccgacaccgacacttgtaattacactgaattatg 45562  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 241721 - 241652
Alignment:
Q  20 tgaaacacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||| |||||||||| ||| ||||||||||||| | |||| | ||||||||| | ||||||||| |||||    
T  241721 tgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacg 241652  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 23479 - 23447
Alignment:
Q  77 cgacaccgacacgtataattacactgaattatg 109  Q
    |||||||||||| ||||||||||||||||||||    
T  23479 cgacaccgacacttataattacactgaattatg 23447  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 3050 - 2986
Alignment:
Q  25 cacggacactcctcagattaggcgtgtctcagtgtggaacacgtgtcatttccgacaccgacacg 89  Q
    |||||||||||||| ||||||||||||  | |||| ||||||||||| | || || |||||||||    
T  3050 cacggacactcctcggattaggcgtgttccggtgtcgaacacgtgtcgtgtctgataccgacacg 2986  T

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