View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9625_low_18 (Length: 298)
Name: NF9625_low_18
Description: NF9625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9625_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 13231937 - 13231656
Alignment:
| Q |
1 |
cgtgttagccactagacacgacttcaatctaaggtgtcttgtctatatagttagtgacagatattagtacatggaggagataattttgaaggttgaaata |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13231937 |
cgtggtagccactagacacgacttcaatctaaggtgtcttgtctatatagttagtgacagatattagtacatggaggagataattttgaaggttgaaata |
13231838 |
T |
|
| Q |
101 |
aaaaccacttactgataagccaagctgctcaataagcttctcaactctctgcctcttatcaacggctgaaagtggccctaatctgaaatcagcagcaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13231837 |
aaaaccacttactgataagccaagctgctcaataagcttctcaactctctgcctcttatcaacagctgaaagtggccctaatctgaaatcagcagcaaac |
13231738 |
T |
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| Q |
201 |
atcaaagtctcatagacggtaagcataggaaaaagcctatcttcttgcataatataagcagaagttcttttaatcaagcttg |
282 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13231737 |
atcaaagtctcatagacagtaagcataggaaaaagcctatcttcttgcataatataagcagaagttcttttaatcaagcttg |
13231656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 13232173 - 13232059
Alignment:
| Q |
1 |
cgtgttagccactagacacgacttcaatctaaggtgtcttgtctatatagttagtgacagatattagtacatggag-ga-gataattttgaaggttgaaa |
98 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||| |
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| T |
13232173 |
cgtgttagacactagacacgacttcaatctaagatgtcttgtgtatatagttagtgac--atattagtacatggagagatcataattttgaaggttgaa- |
13232077 |
T |
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| Q |
99 |
taaaaaccacttactgata |
117 |
Q |
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||||| |||||||||||| |
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| T |
13232076 |
-aaaaaacacttactgata |
13232059 |
T |
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