View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9625_low_23 (Length: 254)
Name: NF9625_low_23
Description: NF9625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9625_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 40378566 - 40378795
Alignment:
| Q |
7 |
tttggtgttgtgcttcttgagcttctttcagggagaaagcccataagtgttgattatccgaaaggtcaacagaatcttgttatgtgggtatgtgtcagtg |
106 |
Q |
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| T |
40378566 |
tttggtgttgtgcttcttgagcttctttcagggagaaagcccataagtgttgattatccgaaaggtcaacagaatcttgttatgtgggtatgtgtcagtg |
40378665 |
T |
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| Q |
107 |
gttatgtacttacttcctaatcattatgtattatggcaaaaataatcgaaaagatattttgcaggcaagtccacttataaatagtggaaaggtgtcacaa |
206 |
Q |
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| T |
40378666 |
gttatgtacttacttcctaatcattatgtattatggcaaaaataatcgaaaagatattttgcaggcaagtccacttataaatagtggaaaggtgtcacaa |
40378765 |
T |
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| Q |
207 |
ttgttagatcctagtttgggtgataactat |
236 |
Q |
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| T |
40378766 |
ttgttagatcctagtttgggtgataactat |
40378795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 10260028 - 10260120
Alignment:
| Q |
7 |
tttggtgttgtgcttcttgagcttctttcagggagaaagcccataagtgttgattatccgaaaggtcaacagaatcttgttatgtgggtatgt |
99 |
Q |
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| T |
10260028 |
tttggtgtggtgcttcttgagcttcttacacggagaaagcctataagtggcgattatcctaaaggtcaagagagccttgtcatgtgggtatgt |
10260120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 10260271 - 10260343
Alignment:
| Q |
164 |
tttgcaggcaagtccacttataaatagtggaaaggtgtcacaattgttagatcctagtttgggtgataactat |
236 |
Q |
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| T |
10260271 |
tttgtaggcaagtccaattctaaatagtgggaagctgtcacaattgttggatcctagtttgggtgataactat |
10260343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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