View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9625_low_31 (Length: 217)
Name: NF9625_low_31
Description: NF9625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9625_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 1268037 - 1268230
Alignment:
| Q |
10 |
aagcagagaagattgtgttgagattggaagaagcaattcttatgggaatgatttattgggtatactattgaatgagatgcaaaagaaggaaactagttta |
109 |
Q |
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| T |
1268037 |
aagcagaaaagattgtgttgagattggaagaagcaattcttatgggaatgatttattgggtatactattgaatgagatgcaaaagaaggaaactagttta |
1268136 |
T |
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| Q |
110 |
aatttgcaattagtgatggatgaatgcaaaacatttttcttttctggtcatgaaacaacagcgcttttactcacttggacagttatgttactag |
203 |
Q |
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| T |
1268137 |
aatttgcaattagtgatggatgaatgcaaaacatttttcttttctggtcatgaaacaacagcgcttttactcacttggacagttatgttactag |
1268230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 6973076 - 6973251
Alignment:
| Q |
20 |
gattgtgttgagattggaagaagcaattcttatgggaatgatttattgggtatactattgaatgagatgcaaaagaaggaaactagtttaaatttgcaat |
119 |
Q |
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| T |
6973076 |
gattgtgtggaaataggtagaagcaaatcttatgggaatgatttattgggaatgttgttagatgagatacaaaagagtggaa---gcttaaacctacaat |
6973172 |
T |
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| Q |
120 |
tagtgatggatgaatgcaaaacatttttcttttctggtcatgaaacaacagcgcttttactcacttggacagttatgtt |
198 |
Q |
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| T |
6973173 |
tagttatggatgaatgcaaaacattcttctttgctggacatgaaacaactgcactcttactcacatggactgctatgtt |
6973251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 38292769 - 38292729
Alignment:
| Q |
125 |
atggatgaatgcaaaacatttttcttttctggtcatgaaac |
165 |
Q |
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| T |
38292769 |
atggatgaatgcaagacctttttctttgctggtcatgaaac |
38292729 |
T |
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