View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9625_low_4 (Length: 439)

Name: NF9625_low_4
Description: NF9625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9625_low_4
NF9625_low_4
[»] chr5 (3 HSPs)
chr5 (1-402)||(6697855-6698255)
chr5 (118-197)||(9045160-9045239)
chr5 (122-187)||(31981834-31981898)
[»] chr6 (5 HSPs)
chr6 (81-205)||(31442517-31442641)
chr6 (79-168)||(20915980-20916069)
chr6 (81-168)||(7867931-7868018)
chr6 (80-205)||(21762021-21762146)
chr6 (120-205)||(30836427-30836512)
[»] chr7 (3 HSPs)
chr7 (79-205)||(20077288-20077414)
chr7 (100-199)||(4407796-4407895)
chr7 (98-200)||(30061509-30061611)
[»] chr8 (5 HSPs)
chr8 (81-196)||(5334273-5334388)
chr8 (81-194)||(26083903-26084016)
chr8 (81-193)||(26981035-26981147)
chr8 (78-138)||(42932713-42932773)
chr8 (137-195)||(42934922-42934980)
[»] chr4 (8 HSPs)
chr4 (81-199)||(10427600-10427717)
chr4 (81-196)||(9199750-9199865)
chr4 (81-145)||(9199512-9199576)
chr4 (124-196)||(9201332-9201404)
chr4 (120-205)||(9451281-9451366)
chr4 (80-205)||(27067873-27067998)
chr4 (80-150)||(12094856-12094926)
chr4 (80-153)||(24257702-24257775)
[»] chr3 (8 HSPs)
chr3 (98-205)||(11582591-11582698)
chr3 (105-167)||(2241438-2241500)
chr3 (120-205)||(42655812-42655897)
chr3 (81-205)||(52041330-52041454)
chr3 (120-205)||(1529204-1529290)
chr3 (80-153)||(22424368-22424441)
chr3 (81-187)||(1141744-1141850)
chr3 (120-191)||(37605380-37605452)
[»] chr2 (5 HSPs)
chr2 (79-173)||(28125534-28125628)
chr2 (81-153)||(22625385-22625457)
chr2 (80-194)||(38996477-38996591)
chr2 (81-200)||(32281486-32281605)
chr2 (120-168)||(38955823-38955871)
[»] chr1 (3 HSPs)
chr1 (80-200)||(15700720-15700840)
chr1 (120-168)||(22964046-22964094)
chr1 (120-191)||(46555541-46555613)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 6697855 - 6698255
Alignment:
Q  1 agttaataaacaatacatcctatgatacacaaacaagattttacaaaggataaactgtgattattcaaacaagactcaaaatctttcttattaaaatttg 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  6697855 agtttataaacaatacatcctatgatacacaaacaagattttacaaaggataaactgtgattattcaaacaagactcaaaatctttcttactaaaacttg 6697954  T
Q  101 tctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtttttcctaatcatcactctaa 200  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  6697955 tctggtcaagcaatctcataccttaattttaacctaatattttccctccatcatgcaagcattaaattctcttgagtgcttttcataatcatcgctctaa 6698054  T
Q  201 gttcagtttcaataacatgaatgcattgcacactgcttaaggaatgctatgcataggaaaacaaaattcattggaggtggctttactactgttttcaaag 300  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6698055 gttcagtttcaataacatgaatgccttgcacactgcttaaggaatgctatgcataggaaaacaaaactcattggaggtggctttactactgttttcaaag 6698154  T
Q  301 ttaatatgcaccgtgacacaactcaaattaattgttttctctttttacaatacattttatctcttctgcaaaccaaaatcaatcttgcttcctcaacctt 400  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  6698155 ttaatatgcatcgtgacacaactcaaattaattgttttctctttttacaatacattttatctctt-tgcaaaccaaaattaatcttgcttcctcaacctt 6698253  T
Q  401 tt 402  Q
    ||    
T  6698254 tt 6698255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 9045160 - 9045239
Alignment:
Q  118 ataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtttttcctaatcatcactc 197  Q
    |||||||||||||||| ||||||||||||||||||||  || |||||||||||| | |||| ||||||||||||||||||    
T  9045160 ataccctaattttaacctaatattttccctccatcatcaaaacattaaattctccttagtgcttttcctaatcatcactc 9045239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 31981834 - 31981898
Alignment:
Q  122 cctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtttttccta 187  Q
    |||||||||||| ||||||||||||| |||| | |||||||| |||| || |||||| ||||||||    
T  31981834 cctaattttaacctaatattttccctacatcct-caagcatttaattttcatgagtgcttttccta 31981898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 81 - 205
Target Start/End: Original strand, 31442517 - 31442641
Alignment:
Q  81 atctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtt 180  Q
    |||||||||| ||||  |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| | |||| |    
T  31442517 atctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatcatccaagcattaaattctcctaagtgct 31442616  T
Q  181 tttcctaatcatcactctaagttca 205  Q
    |||||||||||||||||||||||||    
T  31442617 tttcctaatcatcactctaagttca 31442641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 20916069 - 20915980
Alignment:
Q  79 aaatctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaatt 168  Q
    |||||||||||| ||||  ||||||| ||||||||| | ||||| |||||||||| |||||||||||||||||||| |||||||||||||    
T  20916069 aaatctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccatcatccaagcattaaatt 20915980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 168
Target Start/End: Complemental strand, 7868018 - 7867931
Alignment:
Q  81 atctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaatt 168  Q
    |||||||||| ||||  || ||||||||||| ||||||||||||||||| | | |||||||||||||||||  | |||||||| ||||    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagcatttaatt 7867931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 21762021 - 21762146
Alignment:
Q  80 aatctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgt 179  Q
    ||||||||||| ||||| ||||||| |||||| ||  |  |||||||||||||| || ||||||||||||||||  |||  ||| |||| || | ||||     
T  21762021 aatctttcttactaaaacttgtctgatcaagctattgctcaccctaattttaacctactattttccctccatcacccaattatttaattttcgttagtgc 21762120  T
Q  180 ttttcctaatcatcactctaagttca 205  Q
    |||||||| ||||||  |||||||||    
T  21762121 ttttcctactcatcaagctaagttca 21762146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 30836512 - 30836427
Alignment:
Q  120 accctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtttttcctaatcatcactctaagttca 205  Q
    |||||||||||||  ||||||||||||||||||   |||||||| |||| || |||||| ||| |||| ||| ||  |||||||||    
T  30836512 accctaattttaatctaatattttccctccatcccccaagcatttaattttcatgagtgctttccctactcagcaagctaagttca 30836427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 20077414 - 20077288
Alignment:
Q  79 aaatctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtg 178  Q
    |||||||||||| ||||  |||| |||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| | | ||||    
T  20077414 aaatctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatcatccaagcattaaattcaccttagtg 20077315  T
Q  179 tttttcctaatcatcactctaagttca 205  Q
     ||||||||||||||||| || |||||    
T  20077314 cttttcctaatcatcactttaggttca 20077288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 4407796 - 4407895
Alignment:
Q  100 gtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtttttcctaatcatcactcta 199  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||  ||| |||||||||||| | ||||||||||||||||||| |||||    
T  4407796 gtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcacccaaacattaaattctccttagtgtttttcctaatcatcgctcta 4407895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 30061509 - 30061611
Alignment:
Q  98 ttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtttttcctaatcatcactc 197  Q
    ||||||| |||||| ||||||||||||||||| | | |||||||||||||||||  | |||| ||| ||||||    |||| || |||||||||||||||    
T  30061509 ttgtctgatcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagtatttaattcttcaaagtgcttatcctaatcatcactc 30061608  T
Q  198 taa 200  Q
    |||    
T  30061609 taa 30061611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 5334273 - 5334388
Alignment:
Q  81 atctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtt 180  Q
    |||||||||||||||| || |||| |||| |||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||| | || |    
T  5334273 atctttcttattaaaaattatctgatcaaacaatatcataccctaattttaacctaagattttccctccatcatccaagcattaaattctctttaatgct 5334372  T
Q  181 tttcctaatcatcact 196  Q
    ||||||||||||||||    
T  5334373 tttcctaatcatcact 5334388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 26083903 - 26084016
Alignment:
Q  81 atctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtt 180  Q
    |||||||||| ||||  ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||||||||||  | |||| |    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcatcaaagcattaaattcttcttagtgct 26084002  T
Q  181 tttcctaatcatca 194  Q
    ||||||||||||||    
T  26084003 tttcctaatcatca 26084016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 26981035 - 26981147
Alignment:
Q  81 atctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtt 180  Q
    |||||||||| ||||  |||| || ||||||||| |||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| | ||||||    
T  26981035 atctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccatcatccaagcattaaattctccttagtgtt 26981134  T
Q  181 tttcctaatcatc 193  Q
    |||||||||||||    
T  26981135 tttcctaatcatc 26981147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 42932713 - 42932773
Alignment:
Q  78 aaaatctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaat 138  Q
    ||||||||||||| ||||  ||||||| ||||||||| ||||| |||||||||||| ||||    
T  42932713 aaaatctttcttactaaagcttgtctgatcaagcaatatcatatcctaattttaacctaat 42932773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 42934922 - 42934980
Alignment:
Q  137 atattttccctccatcatgcaagcattaaattctcttgagtgtttttcctaatcatcac 195  Q
    ||||||||||||||||||  || |||||||||||| | | || ||||||||||||||||    
T  42934922 atattttccctccatcatcaaaacattaaattctccttaatgcttttcctaatcatcac 42934980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 10427717 - 10427600
Alignment:
Q  81 atctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtt 180  Q
    |||||| ||||||||  |||| |||||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||  | ||||||    
T  10427717 atcttttttattaaaggttgtttggtcaagcaatatcataccctaattttaacctaatattt-ccctccatcatccaagcattaaattcttcttagtgtt 10427619  T
Q  181 tttcctaatcatcactcta 199  Q
    |||||||||||||||||||    
T  10427618 tttcctaatcatcactcta 10427600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 9199750 - 9199865
Alignment:
Q  81 atctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtt 180  Q
    |||||||||| ||||  ||||||||||||||||| ||||| || | | ||||| |||||||||||||||||||| |||||||||||||||| | |||  |    
T  9199750 atctttcttactaaagcttgtctggtcaagcaatatcatatcccactattaacctaatattttccctccatcatccaagcattaaattctccttagttct 9199849  T
Q  181 tttcctaatcatcact 196  Q
    ||||||||||||||||    
T  9199850 tttcctaatcatcact 9199865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 9199512 - 9199576
Alignment:
Q  81 atctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttcc 145  Q
    |||||||||| ||||  ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttcc 9199576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 9201332 - 9201404
Alignment:
Q  124 taattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtttttcctaatcatcact 196  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||| | |||  |||||||||||||||||    
T  9201332 taattttaacctaatattttcccaccatcatccaagcattaaattctccttagttcttttcctaatcatcact 9201404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 9451281 - 9451366
Alignment:
Q  120 accctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtttttcctaatcatcactctaagttca 205  Q
    |||||||||||||| |||||||||||||||||||  |||||||| |||| || | |||| ||||| || ||||||  |||||||||    
T  9451281 accctaattttaacctaatattttccctccatcacccaagcatttaattttcgttagtgcttttcgtactcatcaagctaagttca 9451366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 27067873 - 27067998
Alignment:
Q  80 aatctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgt 179  Q
    ||||||||||| ||||  |||| ||||||| | |||  |||||||||||||||  |||||||||||||  |||||  | ||||| ||||||| | ||||     
T  27067873 aatctttcttactaaagcttgtttggtcaaactatcctataccctaattttaatctaatattttcccttgatcataaacgcatttaattctccttagtgc 27067972  T
Q  180 ttttcctaatcatcactctaagttca 205  Q
    |||||||| ||||||  |||||||||    
T  27067973 ttttcctactcatcaagctaagttca 27067998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 12094926 - 12094856
Alignment:
Q  80 aatctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctcca 150  Q
    ||||||||||| ||||  |||| ||||||||| ||   | |||||||||||||| ||||||||||||||||    
T  12094926 aatctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattttccctcca 12094856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 24257702 - 24257775
Alignment:
Q  80 aatctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatca 153  Q
    ||||||||||| ||||  |||| ||||||||||||     |||||||||||||| ||||||||| |||||||||    
T  24257702 aatctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatatttttcctccatca 24257775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 98 - 205
Target Start/End: Original strand, 11582591 - 11582698
Alignment:
Q  98 ttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtttttcctaatcatcactc 197  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| ||| |||||||||||  | ||||||||||||||| |||||||    
T  11582591 ttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccgtcatccaaacattaaattcttcttagtgtttttcctaataatcactc 11582690  T
Q  198 taagttca 205  Q
    || |||||    
T  11582691 taggttca 11582698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 2241500 - 2241438
Alignment:
Q  105 gtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaat 167  Q
    |||||||||||||||||| |||||||||| ||||||||| |||| ||||| ||||||||||||    
T  2241500 gtcaagcaatctcataccttaattttaacctaatatttttcctctatcatacaagcattaaat 2241438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 42655812 - 42655897
Alignment:
Q  120 accctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtttttcctaatcatcactctaagttca 205  Q
    |||||||||||||| ||||||||||||| |||||  |||||||| |||| |  | ||||||||||||| ||||||  |||||||||    
T  42655812 accctaattttaacataatattttcccttcatcacccaagcatttaattttgattagtgtttttcctactcatcaagctaagttca 42655897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 52041454 - 52041330
Alignment:
Q  81 atctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtt 180  Q
    |||||||||| ||||  |||||||||||||| ||     |||||||||||||| ||||||||||| |||||||  |||||||| |||| |  | |||| |    
T  52041454 atctttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccttccatcacccaagcatttaattttggttagtgct 52041355  T
Q  181 tttcctaatcatcactctaagttca 205  Q
    ||||||| ||||||  |||||||||    
T  52041354 tttcctactcatcaagctaagttca 52041330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 1529204 - 1529290
Alignment:
Q  120 accctaatt-ttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtttttcctaatcatcactctaagttca 205  Q
    ||||||||| ||||| |||| ||||||||||||||| |||||| | ||||||| | | ||||||||||| ||||||  |||||||||    
T  1529204 accctaattcttaacctaattttttccctccatcatacaagcaattaattctcgttaatgtttttcctactcatcaaactaagttca 1529290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 22424441 - 22424368
Alignment:
Q  80 aatctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatca 153  Q
    ||||||||||| |||| ||| ||||||||||| ||     |||||||||||||| |||||||||||||||||||    
T  22424441 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatca 22424368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 1141744 - 1141850
Alignment:
Q  81 atctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtt 180  Q
    |||||||||| ||||  |||| ||||||||||||     || ||||||||||  ||||||||||||||||||   |||||||| |||| || | ||||||    
T  1141744 atctttcttactaaagcttgtttggtcaagcaattgttcactctaattttaatctaatattttccctccatcccccaagcatttaattttcattagtgtt 1141843  T
Q  181 tttccta 187  Q
    |||||||    
T  1141844 tttccta 1141850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 37605452 - 37605380
Alignment:
Q  120 accctaatt-ttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtttttcctaatca 191  Q
    ||||||||| ||||| ||||||||||||||||  |  ||| |||| |||||||||||||| ||||||| ||||    
T  37605452 accctaattcttaacctaatattttccctccactaatcaaacatttaattctcttgagtggttttccttatca 37605380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 28125534 - 28125628
Alignment:
Q  79 aaatctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctctt 173  Q
    |||||||||||| ||||  |||||||||||||| ||||||||||||||||| | | |||||||||||||||||  | |||||||| |||||||||    
T  28125534 aaatctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagcatttaattctctt 28125628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 22625457 - 22625385
Alignment:
Q  81 atctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatca 153  Q
    |||||||||| ||||| |||||||||||||||||   |||||||||||||||| |||||||||||||||||||    
T  22625457 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 22625385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 38996591 - 38996477
Alignment:
Q  80 aatctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgt 179  Q
    ||||||||||| ||||  ||||||| |||||| || |  ||||||||||||||| |||||||||||||||||||  ||| |||| ||||||  | |||||    
T  38996591 aatctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccatcaaacaaacatttaattctgcttagtgt 38996492  T
Q  180 ttttcctaatcatca 194  Q
    |||||||| ||||||    
T  38996491 ttttcctactcatca 38996477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 200
Target Start/End: Original strand, 32281486 - 32281605
Alignment:
Q  81 atctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtt 180  Q
    |||||||||| |||| ||||| ||||||||| ||     |||||||||||||| || ||||||||||||||| | |||||||||||||||    |||| |    
T  32281486 atctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatcctacaagcattaaattcttccaagtgct 32281585  T
Q  181 tttcctaatcatcactctaa 200  Q
    | ||||||||||||||||||    
T  32281586 tatcctaatcatcactctaa 32281605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 38955871 - 38955823
Alignment:
Q  120 accctaattttaacttaatattttccctccatcatgcaagcattaaatt 168  Q
    ||||||||| |||| |||||||||||||||||||  |||||||| ||||    
T  38955871 accctaattctaacctaatattttccctccatcacccaagcatttaatt 38955823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 15700720 - 15700840
Alignment:
Q  80 aatctttcttattaaaatttgtctggtcaagcaatctcataccctaattttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgt 179  Q
    ||||||||||| |||| ||||| ||||||||| ||     |||||||||||||| || ||||||||||||||| | |||||||||||||||    ||||     
T  15700720 aatctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatcctacaagcattaaattcttccaagtgc 15700819  T
Q  180 ttttcctaatcatcactctaa 200  Q
    || ||||||||||||||||||    
T  15700820 ttatcctaatcatcactctaa 15700840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 22964046 - 22964094
Alignment:
Q  120 accctaattttaacttaatattttccctccatcatgcaagcattaaatt 168  Q
    ||||||||| |||| |||||||||||||||||||  |||||||| ||||    
T  22964046 accctaattctaacctaatattttccctccatcaaccaagcatttaatt 22964094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 46555541 - 46555613
Alignment:
Q  120 accctaatt-ttaacttaatattttccctccatcatgcaagcattaaattctcttgagtgtttttcctaatca 191  Q
    ||||||||| ||||| ||||||||||||||||  |  ||| |||| |||||||||||||| ||||||| ||||    
T  46555541 accctaattcttaacctaatattttccctccactaatcaaacatttaattctcttgagtggttttccttatca 46555613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University