View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9625_low_8 (Length: 392)
Name: NF9625_low_8
Description: NF9625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9625_low_8 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 1654533 - 1654170
Alignment:
| Q |
19 |
aaagtgaaccttgtttcaaaggattgatgatggattagcaacatgaatgtgatcaaacatggaaaattgttcctttaactctttccaaacatcaacaaca |
118 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1654533 |
aaagtgaaccttgtttcaaagaattgatgatggattagcaacatgaatgtgatcaaacttggaaaattgttcctttaactctttccaaacatcaacaaca |
1654434 |
T |
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| Q |
119 |
ttcttattaaataagactgaacaatctgagaactaaccgagttcacgatccatgaatgaataagatttatacaatatgtgtagttaatttctctttatgt |
218 |
Q |
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| T |
1654433 |
ttcttaataaataagactgaacaatctgagaactaaccgagttcacgatccatgaatgaataagatttatacaatatgtgtagttaatttctctttatgt |
1654334 |
T |
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| Q |
219 |
tgtcaacacaaaactttctctctctaaaaagtacctttctctggattctctctaactccttatcttcgtcgccccttctttccaaatttctttggttctc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
1654333 |
tgtcaacacaaaactttctctctctaaaaagtacctttctctggattctctctaactccttatctctgccgccccttctttccaaatttctttggttctc |
1654234 |
T |
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| Q |
319 |
aatgtaaacggtggtggctggtggtgcgaagatggaaaaccatccgcatcaccactggtctctg |
382 |
Q |
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| T |
1654233 |
aatgtaaacggcggtgggtggtggtgcgaagatggaaaaccatccgcatcacctctggtctctg |
1654170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 185
Target Start/End: Complemental strand, 28062304 - 28062168
Alignment:
| Q |
53 |
ttagcaacatgaatgtgatcaaacatggaaaattgttcctttaactctttccaaacatcaacaacattcttattaaata----agactgaacaatctgag |
148 |
Q |
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| T |
28062304 |
ttagcaatacgaatgtgatcagacttggaaaattgtctcttcaattctttccaaacatcaacaacattctaaataaatatgatagattgtgcaatctgag |
28062205 |
T |
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| Q |
149 |
aactaaccgagttcacgatccatgaatgaataagatt |
185 |
Q |
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| T |
28062204 |
aactaacataattcgcgatctatgaatatataagatt |
28062168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 185
Target Start/End: Complemental strand, 28072729 - 28072593
Alignment:
| Q |
53 |
ttagcaacatgaatgtgatcaaacatggaaaattgttcctttaactctttccaaacatcaacaacattcttattaaata----agactgaacaatctgag |
148 |
Q |
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| T |
28072729 |
ttagcaatacgaatgtgatcagacttggaaaattgtctcttcaattctttccaaacatcaacaacattctaaataaatatgatagattgtgcaatctgag |
28072630 |
T |
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| Q |
149 |
aactaaccgagttcacgatccatgaatgaataagatt |
185 |
Q |
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| T |
28072629 |
aactaacataattcgcgatctatgaatatataagatt |
28072593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 371
Target Start/End: Original strand, 15049437 - 15049535
Alignment:
| Q |
277 |
cttatcttcgtcgccccttctttccaaatttctttggttctcaatgtaaa---cggtggtggctggtggtgcgaagatggaa-aaccatccgcatcacc |
371 |
Q |
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| T |
15049437 |
cttatctctgtcgccccttctttccaaattcctttggttcacaatgtaaacggcggtggtggctgaaggtgcgaagatggaacaaccatccgcatcacc |
15049535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 378
Target Start/End: Original strand, 26841401 - 26841489
Alignment:
| Q |
291 |
cccttctttccaaatttctttggttctcaatgtaaacggtggtggctggtggtgcgaagatggaa-aaccatccgcatcaccactggtc |
378 |
Q |
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| T |
26841401 |
cccttctttccaaattcttttggttcataatgtaaacggtggtggctgatggtgcgaatatggaacagccatccgcatcaccactggtc |
26841489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 355
Target Start/End: Original strand, 12792810 - 12792845
Alignment:
| Q |
320 |
atgtaaacggtggtggctggtggtgcgaagatggaa |
355 |
Q |
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| T |
12792810 |
atgtaaatggtggtggctggtggtgcgaagatggaa |
12792845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 5745492 - 5745534
Alignment:
| Q |
330 |
tggtggctggtggtgcgaagatggaa-aaccatccgcatcacc |
371 |
Q |
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| T |
5745492 |
tggtggctggtggtgcgaagatggaacatccatccgcatcacc |
5745534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 22376 - 22334
Alignment:
| Q |
330 |
tggtggctggtggtgcgaagatggaa-aaccatccgcatcacc |
371 |
Q |
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| T |
22376 |
tggtggctggtggtgcgaagatggaacatccatccgcatcacc |
22334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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