View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9626_low_1 (Length: 334)
Name: NF9626_low_1
Description: NF9626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9626_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 3273845 - 3274138
Alignment:
| Q |
21 |
cagcccagcaaatttttcaaagggatgatggtaagggaatacaatagataaacctacattattatatattggtttggattttttagaaaatgcatagaaa |
120 |
Q |
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| T |
3273845 |
cagcacagcaaatttttcaaagggatg---gtaagggaatacaatagataaacctacattattatatattggtttggattttttagaaaatgcatagaaa |
3273941 |
T |
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| Q |
121 |
gagataatgaagaagaaatttggagaattcaaaacattacatgcagatgcagatgtgtagatggtattttttatacgcaagc-aaatcatggcatttcaa |
219 |
Q |
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| T |
3273942 |
gagataatgaagaagaaatttggagaattcaaaacattacatgcagatgcaaatgtgtagatggtattttttatacgcaagcaaaatcatggcatttcaa |
3274041 |
T |
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| Q |
220 |
tattctatatacaagaggaaaaatataccttttgaatgaaaaatggtccaacccaattgataacaacaaaacccaaaatgccaaggcatatgataga |
316 |
Q |
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| T |
3274042 |
tattctatatacaagaggaaaaatataccttttgaatgaaaaatggtccaacccaattgataacaacaaaacccaaaatgctaaggcatatgataga |
3274138 |
T |
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