View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9626_low_4 (Length: 283)
Name: NF9626_low_4
Description: NF9626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9626_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 36512679 - 36512938
Alignment:
| Q |
1 |
ggaagatttaaagattttcgtgggacctaaggatgatgatatattgacacattcaattgactaatagataatgcaaatctcatgcacttttcctcactgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36512679 |
ggaagatttaaagattttcgtgggacctaaggatgatgatat--tgacacattcaattgactaatagataatgcaaatctcatgcacttttcctcactgt |
36512776 |
T |
|
| Q |
101 |
taatgttaaatcaatagtattttttatgtacgcgaagaaactaaagttcacacacgtttcaatcaaaaaatttagtggtcaatggtcaatatatcacaat |
200 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36512777 |
taatgttaaatcaataat---ttttatgtacgcgaagaaactaaagttcacacacgtttcaatcaaaaaatttagttgtcaatggtcaatatatcacaat |
36512873 |
T |
|
| Q |
201 |
ttgtgtttagcaaactactattaaagtattgctatatttttatttttgatgtaaaagtattagtag |
266 |
Q |
| |
|
||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36512874 |
ttgtgtttagc-aacaaaaaaaaaagtattgctatatttttatttttgatgtaaaagtattagtag |
36512938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University