View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9626_low_6 (Length: 273)

Name: NF9626_low_6
Description: NF9626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9626_low_6
NF9626_low_6
[»] chr8 (12 HSPs)
chr8 (1-255)||(6140335-6140589)
chr8 (1-255)||(6187182-6187436)
chr8 (4-254)||(6178395-6178645)
chr8 (1-236)||(6045805-6046040)
chr8 (1-75)||(6124401-6124475)
chr8 (153-254)||(6087381-6087482)
chr8 (4-66)||(6087232-6087294)
chr8 (192-241)||(6062242-6062291)
chr8 (1-77)||(6042169-6042245)
chr8 (187-255)||(6124221-6124289)
chr8 (16-66)||(6062066-6062116)
chr8 (1-62)||(6195450-6195511)


Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 6140335 - 6140589
Alignment:
Q  1 tctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctctcgccatgataatccattataacttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6140335 tctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctctcgccatgataatccattataacttg 6140434  T
Q  101 ctcttagcactttttgaatttcgtgaaaggctcccccctttttcacataatcattcaactcggattcccagaattctggttctctggaatgaaaatgtga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6140435 ctcttagcactttttgaatttcgtgaaaggctcccccctttttcacataatcattcaactcggattcccagaattctggttctctggaatgaaaatgtga 6140534  T
Q  201 acccaaaacttgtaaagctaatggaacacctcctgcgcatttaactgccctttca 255  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6140535 acccaaaacttgtaaagctaatggaacgcctcctgcgcatttaactgccctttca 6140589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 6187182 - 6187436
Alignment:
Q  1 tctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctctcgccatgataatccattataacttg 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  6187182 tctagtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctgtcgccatgataatccattataacttg 6187281  T
Q  101 ctcttagcactttttgaatttcgtgaaaggctcccccctttttcacataatcattcaactcggattcccagaattctggttctctggaatgaaaatgtga 200  Q
     |||||||||||||||||| ||| | |||||| | || || ||| ||||   ||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  6187282 ttcttagcactttttgaatatcggggaaggcttctcctttgttctcatacaaatttaactcggattcccagaattcttgttttctggaatgaaaatgtga 6187381  T
Q  201 acccaaaacttgtaaagctaatggaacacctcctgcgcatttaactgccctttca 255  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||    
T  6187382 acccaaaacttctaaagctaatggaacacctcctgcacattcaactgccctttca 6187436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 4 - 254
Target Start/End: Original strand, 6178395 - 6178645
Alignment:
Q  4 agtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctctcgccatgataatccattataacttgctc 103  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||     
T  6178395 agtatccttgtgacgatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatttccttctgtcgccatgataatccattataacttgctt 6178494  T
Q  104 ttagcactttttgaatttcgtgaaaggctcccccctttttcacataatcattcaactcggattcccagaattctggttctctggaatgaaaatgtgaacc 203  Q
    |||||||||||||||| ||| | |||| | | || || ||| ||||   ||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  6178495 ttagcactttttgaatatcgggcaaggattctcctttattctcatacaaattcaactcagattcccagaattctggttttctggaatgaaaatgtgaacc 6178594  T
Q  204 caaaacttgtaaagctaatggaacacctcctgcgcatttaactgccctttc 254  Q
    |||||||| |||||||||||||||||||||||| |||| |||||| |||||    
T  6178595 caaaacttctaaagctaatggaacacctcctgcacattcaactgctctttc 6178645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6045805 - 6046040
Alignment:
Q  1 tctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctctcgccatgataatccattataacttg 100  Q
    |||||||| ||||| |||| |||| | |||||| ||||||||||||| ||||| |||| ||||||| |||| |||||   || |||||||||||| |||     
T  6045805 tctagtattcttgtcacaaaatctcttttttcatctttgaaaaagaacgcaatatctaaaaacatttccttttctcggactgttaatccattatagctta 6045904  T
Q  101 ctcttagcactttttgaatttcgtgaaaggctcccccctttttcacataatcattcaactcggattcccagaattctggttctctggaatgaaaatgtga 200  Q
    |||||| ||||| ||||||| |  | |||| | ||||||| ||| |  |||  ||||| || | |||||||||||| ||   ||| |||| |||||||||    
T  6045905 ctcttaacacttcttgaattccacgtaaggattcccccttgttctccaaatttttcaattcaggttcccagaattcaggacttctagaataaaaatgtga 6046004  T
Q  201 acccaaaacttgtaaagctaatggaacacctcctgc 236  Q
    ||||||||||| ||||||||||||||| ||||||||    
T  6046005 acccaaaacttttaaagctaatggaacgcctcctgc 6046040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6124475 - 6124401
Alignment:
Q  1 tctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctct 75  Q
    |||||||| ||||| |||| |||||| |||||| |||||||||||||||||||||||||||||||| | ||||||    
T  6124475 tctagtatacttgtaacaaaatctttattttcatctttgaaaaagaatgcaatgtctagaaacatttctttctct 6124401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 6087381 - 6087482
Alignment:
Q  153 attcaactcggattcccagaattctggttctctggaatgaaaatgtgaacccaaaacttgtaaagctaatggaacacctcctgcgcatttaactgccctt 252  Q
    |||||| || ||||||||||||||  | | ||| |||| ||||  |||||||||||||| ||||||||||||||||||||||||  ||| ||||||||||    
T  6087381 attcaattcagattcccagaattcaagatttcttgaataaaaaaatgaacccaaaacttttaaagctaatggaacacctcctgcatattcaactgccctt 6087480  T
Q  253 tc 254  Q
    ||    
T  6087481 tc 6087482  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 6087232 - 6087294
Alignment:
Q  4 agtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatt 66  Q
    ||||||||| |||||| |||||| |||||| |||||||||||||||| ||||  |||||||||    
T  6087232 agtatccttatgacaaaatctttattttcatctttgaaaaagaatgcgatgttcagaaacatt 6087294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 6062242 - 6062291
Alignment:
Q  192 aaaatgtgaacccaaaacttgtaaagctaatggaacacctcctgcgcatt 241  Q
    ||||||| |||| ||||||| |||||||||||||||||||||||| ||||    
T  6062242 aaaatgtaaacctaaaacttttaaagctaatggaacacctcctgcacatt 6062291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6042169 - 6042245
Alignment:
Q  1 tctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacattaccttctctcg 77  Q
    |||||||| ||||| |||| |||| | |||||| ||||||||||||| ||||| |||| ||||||| |||| |||||    
T  6042169 tctagtattcttgtcacaaaatctcttttttcatctttgaaaaagaacgcaatatctaaaaacatttccttttctcg 6042245  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 6124289 - 6124221
Alignment:
Q  187 gaatgaaaatgtgaacccaaaacttgtaaagctaatggaacacctcctgcgcatttaactgccctttca 255  Q
    ||||| ||||| ||||||||||||| ||||||||| |||||||||| ||| ||   |||||||||||||    
T  6124289 gaatgtaaatgcgaacccaaaacttttaaagctaagggaacacctcgtgcacacgcaactgccctttca 6124221  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 6062066 - 6062116
Alignment:
Q  16 acaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaacatt 66  Q
    |||| |||||| |||||| |||||||||||||||||| ||| |||||||||    
T  6062066 acaaaatctttattttcatctttgaaaaagaatgcaacgtcaagaaacatt 6062116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6195450 - 6195511
Alignment:
Q  1 tctagtatccttgtgacaatatctttgttttcacctttgaaaaagaatgcaatgtctagaaa 62  Q
    ||||||||| ||||||||   ||||| ||||| ||| |||| ||||||||||||||||||||    
T  6195450 tctagtatctttgtgacagactctttcttttctcctatgaagaagaatgcaatgtctagaaa 6195511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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