View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9626_low_7 (Length: 259)

Name: NF9626_low_7
Description: NF9626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9626_low_7
NF9626_low_7
[»] chr4 (15 HSPs)
chr4 (47-257)||(39310386-39310596)
chr4 (58-257)||(24484784-24484983)
chr4 (57-185)||(39311312-39311440)
chr4 (47-129)||(5469960-5470042)
chr4 (62-155)||(21857508-21857601)
chr4 (62-155)||(21913371-21913464)
chr4 (57-162)||(31414811-31414916)
chr4 (63-156)||(17273625-17273718)
chr4 (63-155)||(14087662-14087754)
chr4 (62-141)||(3464906-3464985)
chr4 (56-185)||(44516784-44516914)
chr4 (127-167)||(24485720-24485760)
chr4 (57-137)||(32159510-32159590)
chr4 (57-183)||(36385759-36385886)
chr4 (57-137)||(36386023-36386103)
[»] chr2 (22 HSPs)
chr2 (57-246)||(34228147-34228337)
chr2 (57-203)||(34228996-34229143)
chr2 (57-167)||(35029819-35029930)
chr2 (56-184)||(39062841-39062969)
chr2 (63-184)||(39062225-39062346)
chr2 (57-157)||(39063805-39063905)
chr2 (112-185)||(31139603-31139676)
chr2 (56-156)||(16871513-16871612)
chr2 (62-157)||(10140614-10140709)
chr2 (57-104)||(42148680-42148727)
chr2 (57-159)||(34173826-34173928)
chr2 (57-167)||(41282914-41283024)
chr2 (70-167)||(1233713-1233810)
chr2 (62-167)||(6204512-6204617)
chr2 (57-101)||(6205448-6205492)
chr2 (57-157)||(16870579-16870679)
chr2 (57-156)||(4854473-4854572)
chr2 (111-185)||(10148554-10148628)
chr2 (64-126)||(39064588-39064650)
chr2 (57-162)||(34172423-34172528)
chr2 (57-157)||(4855308-4855408)
chr2 (65-157)||(33361751-33361843)
[»] chr8 (21 HSPs)
chr8 (60-181)||(42503029-42503150)
chr8 (57-184)||(42578709-42578835)
chr8 (56-181)||(42503866-42503991)
chr8 (57-211)||(11519350-11519505)
chr8 (57-179)||(38443695-38443817)
chr8 (57-184)||(6462561-6462684)
chr8 (57-162)||(7870336-7870441)
chr8 (57-181)||(12203287-12203411)
chr8 (57-181)||(12447715-12447839)
chr8 (57-184)||(6461880-6462007)
chr8 (58-184)||(11520032-11520158)
chr8 (57-185)||(38443034-38443163)
chr8 (64-157)||(38444433-38444526)
chr8 (56-156)||(39308667-39308767)
chr8 (57-157)||(40030499-40030599)
chr8 (57-156)||(39309638-39309737)
chr8 (57-155)||(17938175-17938273)
chr8 (108-150)||(40030069-40030111)
chr8 (66-155)||(17942984-17943073)
chr8 (57-93)||(34587365-34587401)
chr8 (57-101)||(38443623-38443667)
[»] chr3 (16 HSPs)
chr3 (58-181)||(29642400-29642523)
chr3 (58-185)||(35903690-35903818)
chr3 (56-155)||(34936714-34936813)
chr3 (62-144)||(40810267-40810349)
chr3 (109-185)||(44456698-44456774)
chr3 (57-157)||(3799832-3799931)
chr3 (57-153)||(55444553-55444649)
chr3 (57-156)||(34329358-34329457)
chr3 (84-167)||(46461890-46461973)
chr3 (57-162)||(37886654-37886759)
chr3 (56-101)||(44312393-44312438)
chr3 (57-155)||(34330088-34330186)
chr3 (63-137)||(40809585-40809659)
chr3 (55-178)||(1772865-1772988)
chr3 (57-101)||(23513688-23513732)
chr3 (57-156)||(50107568-50107668)
[»] chr1 (8 HSPs)
chr1 (57-185)||(7338739-7338867)
chr1 (60-137)||(7338012-7338089)
chr1 (57-155)||(1764516-1764614)
chr1 (56-155)||(2367513-2367612)
chr1 (62-121)||(49618303-49618362)
chr1 (56-131)||(49385084-49385159)
chr1 (209-257)||(7338650-7338698)
chr1 (57-101)||(27891311-27891355)
[»] chr7 (13 HSPs)
chr7 (56-184)||(35752325-35752452)
chr7 (56-167)||(35753023-35753138)
chr7 (57-185)||(5956439-5956567)
chr7 (57-167)||(42253035-42253144)
chr7 (57-157)||(48204147-48204248)
chr7 (57-185)||(5960933-5961061)
chr7 (57-155)||(43844794-43844892)
chr7 (57-153)||(18947286-18947382)
chr7 (57-156)||(25675716-25675815)
chr7 (57-157)||(18948222-18948322)
chr7 (85-183)||(39020961-39021060)
chr7 (64-183)||(43845830-43845949)
chr7 (60-137)||(16981237-16981314)
[»] chr5 (9 HSPs)
chr5 (57-156)||(120073-120172)
chr5 (53-146)||(40720317-40720410)
chr5 (56-156)||(33529735-33529834)
chr5 (57-179)||(43379432-43379553)
chr5 (57-156)||(3636365-3636464)
chr5 (62-131)||(2639717-2639786)
chr5 (57-157)||(33530668-33530768)
chr5 (111-157)||(29984794-29984840)
chr5 (109-167)||(43378624-43378682)
[»] chr6 (8 HSPs)
chr6 (56-185)||(6826557-6826686)
chr6 (57-185)||(18065719-18065847)
chr6 (57-184)||(34262128-34262254)
chr6 (57-185)||(6829929-6830057)
chr6 (57-184)||(34260116-34260243)
chr6 (58-141)||(28548380-28548463)
chr6 (109-167)||(13207398-13207456)
chr6 (57-157)||(18066257-18066356)
[»] scaffold0151 (1 HSPs)
scaffold0151 (109-167)||(20792-20850)
[»] scaffold0178 (1 HSPs)
scaffold0178 (57-167)||(18481-18591)
[»] scaffold0330 (2 HSPs)
scaffold0330 (57-162)||(12517-12622)
scaffold0330 (61-162)||(13205-13306)
[»] scaffold0402 (1 HSPs)
scaffold0402 (56-155)||(10855-10954)
[»] scaffold0098 (1 HSPs)
scaffold0098 (57-156)||(52264-52363)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 47 - 257
Target Start/End: Original strand, 39310386 - 39310596
Alignment:
Q  47 cttcatctccgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggct 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39310386 cttcatctccgagtccatctttgctccatttaagattcctcaatttatcccatttcaagttatagatgtatgacatgtggaaaaaataaaaccaatggct 39310485  T
Q  147 gagattaaaagctttgaaaaatgcaattgtttaatgaaagaaggagctcacgcgctttcattcttcaaccgcgacccttcttcttcctctcatcctcatc 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||    
T  39310486 gagattaaaagctttgaaaaatgcaattgtttaatgaaagaaggagctcatgcgctttcattcttcaaccgcgacccttcttcttcctctcactctcatc 39310585  T
Q  247 tctgcttctcc 257  Q
     ||| ||||||    
T  39310586 actgtttctcc 39310596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 58 - 257
Target Start/End: Original strand, 24484784 - 24484983
Alignment:
Q  58 agtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaag 157  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24484784 agtccatctttgctccatttaagattcctcaatttatcctatttcaagttatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaag 24484883  T
Q  158 ctttgaaaaatgcaattgtttaatgaaagaaggagctcacgcgctttcattcttcaaccgcgacccttcttcttcctctcatcctcatctctgcttctcc 257  Q
    ||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||    
T  24484884 ctttgaaaaatgcaattgtttaatgaaaacagaagctcacgcgctttcattcttcaaccgcaacccttcttcttcctctcaccctcatcactgtttctcc 24484983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 39311440 - 39311312
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| || | |||||||| ||||||||||||||||||||| |||| |||||||||||||    
T  39311440 gagtccatctttgctccatttaagatttctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaatcaattgctgagattaaaa 39311341  T
Q  157 gctttgaaaaatgcaattgtttaatgaaa 185  Q
    ||||||||||| |||||||||||||||||    
T  39311340 gctttgaaaaaagcaattgtttaatgaaa 39311312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 5470042 - 5469960
Alignment:
Q  47 cttcatctccgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaa 129  Q
    |||||||| ||||||||||||||||||||||||| || |||||||||||||||||   ||||| ||||| |||||||||||||    
T  5470042 cttcatcttcgagtccatctttgctccatttaagtttgctcaatttatcccatttaccattatggatgtgtgacatgtggaaa 5469960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 21857601 - 21857508
Alignment:
Q  62 catctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    |||||||||||||||||   |||||||||||||||||||| || |||||||||| ||||| |||||||||||| |||||| ||||  |||||||    
T  21857601 catctttgctccatttacctttcctcaatttatcccattttaagttatagatgtctgacacgtggaaaaaatacaaccaaaggctaggattaaa 21857508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 21913464 - 21913371
Alignment:
Q  62 catctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    |||||||||||||||||   |||||||||||||||||||| || |||||||||| ||||| |||||||||||| |||||| ||||  |||||||    
T  21913464 catctttgctccatttacctttcctcaatttatcccattttaagttatagatgtctgacacgtggaaaaaatacaaccaaaggctaggattaaa 21913371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 31414916 - 31414811
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||||||||||||||||||||||| ||||||||||||| || |||||  |||| ||| | |||||||||| |||  |||||  || || |||||||||||    
T  31414916 gagtccatctttgctccatttaagtttcctcaatttattccttttcactttattgatatgtgacatgtggcaaatgtaaaaagaagggttgagattaaaa 31414817  T
Q  157 gctttg 162  Q
    ||||||    
T  31414816 gctttg 31414811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 17273718 - 17273625
Alignment:
Q  63 atctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    ||||||||||||||||||  | ||||||||||| |||| ||||  |||||||||||||| |||| ||||| |||  ||| ||||||||||||||    
T  17273718 atctttgctccatttaagtgtgctcaatttatctcattccaaagcatagatgtatgacacgtggcaaaaacaaattcaagggctgagattaaaa 17273625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 14087662 - 14087754
Alignment:
Q  63 atctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    |||||| ||||||||||  |||||||||||| |||||||||| ||||| ||||  |||| |||||||||||| |||||| ||||  |||||||    
T  14087662 atctttactccatttaactttcctcaatttaccccatttcaatttataaatgtgcgacacgtggaaaaaatataaccaaaggctaggattaaa 14087754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 3464985 - 3464906
Alignment:
Q  62 catctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaa 141  Q
    |||||||||||||||||   ||||||||||| | |||||| || |||||||||| ||||| |||||||||||| ||||||    
T  3464985 catctttgctccatttacctttcctcaattttttccattttaagttatagatgtgtgacacgtggaaaaaatacaaccaa 3464906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 44516784 - 44516914
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtgg-aaaaaataaaaccaatggctgagattaa 154  Q
    |||||| ||||||| |||||||| | ||||| |||||| | ||||| || | |||||||| |||||||||| ||||||||||| |||| | || ||||||    
T  44516784 cgagtctatctttgatccatttaggtttccttaatttacctcattttaagtgatagatgtgtgacatgtggaaaaaaataaaatcaatagttgtgattaa 44516883  T
Q  155 aagctttgaaaaatgcaattgtttaatgaaa 185  Q
    ||  |||||||||  |||||  |||||||||    
T  44516884 aaaatttgaaaaagacaattaattaatgaaa 44516914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 24485760 - 24485720
Alignment:
Q  127 aaaaaataaaaccaatggctgagattaaaagctttgaaaaa 167  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  24485760 aaaaaataaaatcaatggctgagattaaaagctttgaaaaa 24485720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 32159590 - 32159510
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaa 137  Q
    |||| ||||||||||||||||| | |||||||||||| |||||||||     | ||||| |||||||||||||||||||||    
T  32159590 gagtgcatctttgctccatttaggtttcctcaatttaccccatttcattccttggatgtgtgacatgtggaaaaaataaaa 32159510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 36385886 - 36385759
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtg-gaaaaaataaaaccaatggctgagattaaa 155  Q
    |||| |||||||||||||||| |  || ||||||||| |||||||| | | || ||||| |||||||||  |||||| |||| ||||||||| |||||||    
T  36385886 gagtgcatctttgctccatttcactttgctcaatttaccccatttctagtaatggatgtgtgacatgtgtaaaaaaaaaaaatcaatggctgtgattaaa 36385787  T
Q  156 agctttgaaaaatgcaattgtttaatga 183  Q
     |  ||| |||| |||||| ||||||||    
T  36385786 tggcttggaaaaagcaattctttaatga 36385759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 36386103 - 36386023
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaa 137  Q
    |||| |||||||||||||||| |  || ||||||||| |||||||| | | || ||||| ||||||||| |||||| ||||    
T  36386103 gagtgcatctttgctccatttcactttgctcaatttaccccatttctagtcatggatgtgtgacatgtgtaaaaaaaaaaa 36386023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 57 - 246
Target Start/End: Original strand, 34228147 - 34228337
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaa-aataaaaccaatggctgagattaaa 155  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||| ||||||| ||||| |||||||||||    
T  34228147 gagtccatctttgctccatttaagattcctcaatttaccccatttcaagttatagatgtgtgacatgtggaaaaaaataaaatcaatgcctgagattaaa 34228246  T
Q  156 agctttgaaaaatgcaattgtttaatgaaagaaggagctcacgcgctttcattcttcaaccgcgacccttcttcttcctctcatcctcatc 246  Q
    |||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||||||    
T  34228247 agctttgaaaaatgcaattgtttaatgaaaaaaggagctcacgttctttcattcttcaaccgcggcccttcttcttcctctcaccctcatc 34228337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 34229143 - 34228996
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| || | |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34229143 gagtccatctttgctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaa 34229044  T
Q  157 gctttga-aaaatgcaattgtttaatgaaagaaggagctcacgcgctt 203  Q
    ||||||| |||| ||||||||||||||||| ||| |||  ||||||||    
T  34229043 gctttgaaaaaaagcaattgtttaatgaaaaaagaagcatacgcgctt 34228996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 35029930 - 35029819
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaa-aaaataaaaccaatggctgagattaaa 155  Q
    ||||| |||||||||||||||| | |||||||||||| |||||||||| | |||||||| |||||||||||| |||| |||| |||||| || |||||||    
T  35029930 gagtctatctttgctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtggaaaaaaacaaaatcaatggttgtgattaaa 35029831  T
Q  156 agctttgaaaaa 167  Q
    || |||||||||    
T  35029830 aggtttgaaaaa 35029819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 184
Target Start/End: Complemental strand, 39062969 - 39062841
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    |||||||||||||| |||||||| | ||  |||||||| || ||||||| | ||||||||||||||||||| || ||||||| ||||||||  |||||||    
T  39062969 cgagtccatctttgttccatttatgtttgttcaatttacccaatttcaagtcatagatgtatgacatgtggcaacaataaaatcaatggctaggattaaa 39062870  T
Q  156 agctttgaaaaatgcaattgtttaatgaa 184  Q
    || |||| |||| ||| |||||| |||||    
T  39062869 aggtttggaaaaagcatttgtttgatgaa 39062841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 39062225 - 39062346
Alignment:
Q  63 atctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaagctttg 162  Q
    |||||||||||||||  | ||  ||||||||||||||||||| | ||||||||||||||||||| ||||||||||  ||||  || ||||||||| ||||    
T  39062225 atctttgctccattttggtttgttcaatttatcccatttcaagtcatagatgtatgacatgtggcaaaaataaaatgaatgtttgtgattaaaaggtttg 39062324  T
Q  163 aaaaatgcaattgtttaatgaa 184  Q
     ||||| || |||||| |||||    
T  39062325 caaaatacacttgtttgatgaa 39062346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 39063805 - 39063905
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||||||||||||||||||||| | ||||||||||||| |  |||||  |||| |||||||||||||||| |||  ||||| |||||| || ||||||||    
T  39063805 gagtccatctttgctccatttaggtttcctcaatttattcattttcactttattgatgtatgacatgtggcaaatgtaaaaacaatggttgggattaaaa 39063904  T
Q  157 g 157  Q
    |    
T  39063905 g 39063905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 31139603 - 31139676
Alignment:
Q  112 atgtatgacatgtggaaaaaataaaaccaatggctgagattaaaagctttgaaaaatgcaattgtttaatgaaa 185  Q
    |||| |||||||| | || |||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||    
T  31139603 atgtgtgacatgttgcaacaataaaaccattggctgagattaaaaggtttaaaaaatacaattgtttaatgaaa 31139676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 16871612 - 16871513
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    ||||| ||||||||||||||||| ||  | ||||||||||||||||||| | |||||||  ||||||||||  ||| |||||| || |||||||||||||    
T  16871612 cgagttcatctttgctccatttaggaagcttcaatttatcccatttcaactcatagatgactgacatgtgg-caaactaaaacgaagggctgagattaaa 16871514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 10140709 - 10140614
Alignment:
Q  62 catctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaag 157  Q
    ||||||||||||||||||||  |||||||||| |||  ||||  | ||||||| ||||||||||| ||||||| ||||||  ||||| ||||||||    
T  10140709 catctttgctccatttaagaagcctcaatttacccctgttcacgtaatagatgaatgacatgtggcaaaaatagaaccaagagctgatattaaaag 10140614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 42148680 - 42148727
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaa 104  Q
    |||||||||||||||||||||| | || ||||||||||||||||||||    
T  42148680 gagtccatctttgctccatttatgttttctcaatttatcccatttcaa 42148727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 34173928 - 34173826
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    ||||||||||||||||| |||  | || |||||||||| || |||||  |||| ||||| |||||||||  |||  ||||| |||||| |||||||||||    
T  34173928 gagtccatctttgctcccttttggttttctcaatttattccttttcattttattgatgtgtgacatgtgacaaatgtaaaaacaatggttgagattaaaa 34173829  T
Q  157 gct 159  Q
    |||    
T  34173828 gct 34173826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 41283024 - 41282914
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||||||||||| ||||||||||| || |||||||||   |||||   || || ||||| |||||||||||| |||| |||| || || |||||||||||    
T  41283024 gagtccatctttactccatttaagtttgctcaatttacatcatttaccatcatggatgtgtgacatgtggaataaattaaacaaagggttgagattaaaa 41282925  T
Q  157 gctttgaaaaa 167  Q
     ||| ||||||    
T  41282924 ccttagaaaaa 41282914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 1233713 - 1233810
Alignment:
Q  70 ctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaagctttgaaaaa 167  Q
    ||||||||| | |||||||||||| ||||||| || | || ||||| ||||| |||| ||||||||||  ||||| | ||||||||| ||| ||||||    
T  1233713 ctccatttaggtttcctcaatttaccccatttgaagtcatggatgtgtgacacgtggcaaaaataaaataaatggttaagattaaaaccttagaaaaa 1233810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 6204512 - 6204617
Alignment:
Q  62 catctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaagcttt 161  Q
    |||||||||||||||||||   |||| |||||| ||| ||||  | | |||||| | |||||||| ||| |||||| ||||||| ||||||||||| |||    
T  6204512 catctttgctccatttaaggagcctccatttataccaattcacttcacagatgtttaacatgtggcaaatataaaatcaatggcagagattaaaaggttt 6204611  T
Q  162 gaaaaa 167  Q
     |||||    
T  6204612 taaaaa 6204617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 6205492 - 6205448
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccattt 101  Q
    |||||||||||||||||||||| | |||||||||||| |||||||    
T  6205492 gagtccatctttgctccatttaggcttcctcaatttaccccattt 6205448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 16870579 - 16870679
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    ||||| ||||||||||||||||   ||||||||||||| || ||||||   |||||||| |||||  | | ||||||||| |||| || |||||||||||    
T  16870579 gagtcaatctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaa 16870678  T
Q  157 g 157  Q
    |    
T  16870679 g 16870679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 4854473 - 4854572
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| ||||||||||||||||| | |  ||| |||||  || ||||||  ||||||||| |||||| ||| |||||||||  |||||| |||||||||||    
T  4854473 gagttcatctttgctccatttatgttgactccatttactccttttcaatgtatagatgtgtgacatatggtaaaaataaattcaatggttgagattaaaa 4854572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 10148628 - 10148554
Alignment:
Q  111 gatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaagctttgaaaaatgcaattgtttaatgaaa 185  Q
    ||||| |||||||||| |||||||||| ||| || |||||||||||  |||| ||||  || |||||||||||||    
T  10148628 gatgtgtgacatgtggtaaaaataaaatcaagggttgagattaaaaagtttggaaaaaacacttgtttaatgaaa 10148554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 39064650 - 39064588
Alignment:
Q  64 tctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtgg 126  Q
    ||||||||||||||| | ||||||||||||| || |||||  |||| ||||| ||||||||||    
T  39064650 tctttgctccatttatgtttcctcaatttattccttttcattttattgatgtgtgacatgtgg 39064588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 34172423 - 34172528
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    ||||| |||||| ||||||||| | || |||||||||| || |||||  |||| ||||| |||||||||  |||  |||||  || || |||||||||||    
T  34172423 gagtcaatcttttctccatttaggttttctcaatttattccttttcattttattgatgtgtgacatgtgacaaatgtaaaaataagggttgagattaaaa 34172522  T
Q  157 gctttg 162  Q
    ||||||    
T  34172523 gctttg 34172528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 4855408 - 4855308
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| ||||||||||||||||| | || |||||||||  || ||||||  ||||||||| ||||| |||||| ||| |||  ||| ||||  ||||||||    
T  4855408 gagttcatctttgctccatttatgtttgctcaatttactccttttcaatgtatagatgtgtgacacgtggaacaaacaaattcaaaggctatgattaaaa 4855309  T
Q  157 g 157  Q
    |    
T  4855308 g 4855308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 33361843 - 33361751
Alignment:
Q  65 ctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaag 157  Q
    |||||||||||||| |||  ||| |||||| ||| ||||    || |||||||||||||||| ||||| ||| |||| || ||||||||||||    
T  33361843 ctttgctccatttaggatgactccatttataccagttcagtgcattgatgtatgacatgtggcaaaaacaaacccaaaggatgagattaaaag 33361751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 42503029 - 42503150
Alignment:
Q  60 tccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaagct 159  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| || |||||||| |||||||| |||||||||||| ||||||||| ||||||||| |    
T  42503029 tccatctttgctccatttaagtttcctcaatttaccccatttcatatcatagatgtgtgacatgtagaaaaaataaaatcaatggctgtgattaaaaggt 42503128  T
Q  160 ttgaaaaatgcaattgtttaat 181  Q
    ||| |||| |||||| ||||||    
T  42503129 ttggaaaaggcaattctttaat 42503150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 42578709 - 42578835
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||||||||||||||||||||| | || ||||||||| |||||||||| | ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  42578709 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggcaaaaataaaatcaatggctgagattaaaa 42578808  T
Q  157 gctttgaaaaatgcaattgtttaatgaa 184  Q
    | |||| |||| ||| |||||| |||||    
T  42578809 gatttggaaaa-gcacttgtttgatgaa 42578835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 42503991 - 42503866
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    ||||||||||||||||||||||| | |||||||||||| |||||| || || |||||||| |||||||||||||||||||||  |||||||| |||||||    
T  42503991 cgagtccatctttgctccatttaggcttcctcaatttaccccattccatatcatagatgtgtgacatgtggaaaaaataaaattaatggctgtgattaaa 42503892  T
Q  156 agctttgaaaaatgcaattgtttaat 181  Q
    || |||| |||| |||||| ||||||    
T  42503891 aggtttggaaaaggcaattctttaat 42503866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 11519350 - 11519505
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtgg-aaaaaataaaaccaatggctgagattaaa 155  Q
    |||| ||||||||||| ||||| | ||| |||||||| |||||||||||| |||||||| |||||||||| ||||||||||| |||| |||| |||||||    
T  11519350 gagttcatctttgctcaatttaggtttcttcaatttaccccatttcaaatcatagatgtgtgacatgtggaaaaaaataaaatcaatagctgtgattaaa 11519449  T
Q  156 agctttgaaaaatgcaattgtttaatgaaagaaggagctcacgcgctttcattctt 211  Q
    || |||| |||| |||||| |||||||||| ||  ||| ||| |||||||||||||    
T  11519450 aggtttggaaaaagcaattctttaatgaaaaaaacagcccactcgctttcattctt 11519505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 38443695 - 38443817
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||||| | |||| ||  |||||||| |||||||||||| ||||| ||| ||||||||    
T  38443695 gagtccatctttgctccatttaagtttccacaatttaccccatttcaagtcatagttgcgtgacatgtagaaaaaataaaatcaatgactgtgattaaaa 38443794  T
Q  157 gctttgaaaaatgcaattgttta 179  Q
    | |||| |||||| |||| ||||    
T  38443795 ggtttggaaaatgtaattcttta 38443817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 184
Target Start/End: Complemental strand, 6462684 - 6462561
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||||||||||||||||||||| | || ||||||||| |||||||||| |  |||||||||||||||||| ||||||||    |||||||||||||||||    
T  6462684 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcctagatgtatgacatgtggcaaaaataa----aatggctgagattaaaa 6462589  T
Q  157 gctttgaaaaatgcaattgtttaatgaa 184  Q
    | || | |||| ||| |||||| |||||    
T  6462588 gattaggaaaacgcacttgtttgatgaa 6462561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 7870441 - 7870336
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    ||||||||||||||||||||||   || ||||||||| ||||||| || |||||||||| |||||| |||||||||||||| |||||| || ||||||||    
T  7870441 gagtccatctttgctccatttagactttctcaatttaccccatttgaagttatagatgtgtgacatatggaaaaaataaaatcaatggttgtgattaaaa 7870342  T
Q  157 gctttg 162  Q
    | ||||    
T  7870341 ggtttg 7870336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 181
Target Start/End: Complemental strand, 12203411 - 12203287
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    ||||||||||||||||||||| |  ||||||||||||| ||||||||| | |||||||| ||  ||||| |||||||| || |||||  || ||||||||    
T  12203411 gagtccatctttgctccatttcattttcctcaatttataccatttcaagtcatagatgtgtggtatgtgaaaaaaatacaatcaatgattgtgattaaaa 12203312  T
Q  157 gctttgaaaaatgcaattgtttaat 181  Q
    | ||||||||| |||||| ||||||    
T  12203311 ggtttgaaaaaagcaattctttaat 12203287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 181
Target Start/End: Complemental strand, 12447839 - 12447715
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    ||||||||||||||||||||| |  ||||||||||||| ||||||||| | |||||||| ||  ||||| |||||||| || |||||  || ||||||||    
T  12447839 gagtccatctttgctccatttcattttcctcaatttataccatttcaagtcatagatgtgtggtatgtgaaaaaaatacaatcaatgattgtgattaaaa 12447740  T
Q  157 gctttgaaaaatgcaattgtttaat 181  Q
    | ||||||||| |||||| ||||||    
T  12447739 ggtttgaaaaaagcaattctttaat 12447715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 6461880 - 6462007
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| ||||||||||||||||  | || ||||||||||  |||||||| ||||||||||||||||||||| |||||||||| |||||| || |||||| |    
T  6461880 gagttcatctttgctccatttcggtttgctcaatttatttcatttcaagttatagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaata 6461979  T
Q  157 gctttgaaaaatgcaattgtttaatgaa 184  Q
      |||| ||||| || |||||| |||||    
T  6461980 agtttggaaaatacatttgtttgatgaa 6462007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 184
Target Start/End: Complemental strand, 11520158 - 11520032
Alignment:
Q  58 agtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaag 157  Q
    |||||||||||| |  ||||| | || |||||||||  |||||| || | |||||||| ||||||||| ||||||||||| |||||| || |||||||||    
T  11520158 agtccatctttgttttatttaggttttctcaatttacaccatttaaagtcatagatgtgtgacatgtgaaaaaaataaaatcaatggttgtgattaaaag 11520059  T
Q  158 ctttgaaaaatgcaattgtttaatgaa 184  Q
     ||||  |||  ||||| |||||||||    
T  11520058 gtttggtaaaaacaattatttaatgaa 11520032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 38443034 - 38443163
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtgg-aaaaaataaaaccaatggctgagattaaa 155  Q
    ||||||||||||||||||||||||  | ||| ||||| |||||||   || || ||||| |||||||||| |||| | |||||||| || ||||||||||    
T  38443034 gagtccatctttgctccatttaagtctgctccatttaccccatttaccatcatggatgtgtgacatgtggcaaaatagaaaaccaagggttgagattaaa 38443133  T
Q  156 agctttgaaaaatgcaattgtttaatgaaa 185  Q
    ||  ||| |||| ||| |||||| ||||||    
T  38443134 agggttggaaaaagcacttgttttatgaaa 38443163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 38444526 - 38444433
Alignment:
Q  64 tctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaag 157  Q
    |||| ||||||||||   |||||||||||| || ||||||| |||||||||| ||||||||||||||| | ||| ||| || || |||||||||    
T  38444526 tcttagctccatttagatttcctcaatttacccaatttcaagttatagatgtgtgacatgtggaaaaagttaaatcaagggttgtgattaaaag 38444433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 39308667 - 39308767
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    ||||||||||||||||||||||| ||  |||| ||||||||| |||||  | |||||||  |||||||||| |||| |||||  || ||||| |||||||    
T  39308667 cgagtccatctttgctccatttaggaaacctccatttatcccttttcacctcatagatgactgacatgtggcaaaactaaaatgaagggctgggattaaa 39308766  T
Q  156 a 156  Q
    |    
T  39308767 a 39308767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 40030599 - 40030499
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| |||||||||||||||||   || |||||||||| || ||||||   |||||||| |||||  ||  ||||||||| |||| ||||||||||||||    
T  40030599 gagttcatctttgctccatttactcttgctcaatttattccttttcaatgcatagatgtgtgacacttgacaaaaataaatccaaaggctgagattaaaa 40030500  T
Q  157 g 157  Q
    |    
T  40030499 g 40030499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 39309737 - 39309638
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    ||||| |||||||||||||||| ||  |||| ||||||||| |||||  | |||||||  |||||||||| ||||  ||||  || ||||||||||||||    
T  39309737 gagtctatctttgctccatttaggaaacctccatttatcccttttcacctcatagatgattgacatgtggcaaaacaaaaatgaagggctgagattaaaa 39309638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 17938175 - 17938273
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    |||| |||||||||||||||| |  || ||||||||| ||||||| ||   || |||||  || ||||||||||||||||| |||||| || |||||||    
T  17938175 gagtgcatctttgctccatttcactttgctcaatttaccccatttgaatacatggatgtgcgaaatgtggaaaaaataaaatcaatgggtgtgattaaa 17938273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 40030111 - 40030069
Alignment:
Q  108 atagatgtatgacatgtggaaaaaataaaaccaatggctgaga 150  Q
    |||||||| |||||||||||||||||||| | |||||||||||    
T  40030111 atagatgtttgacatgtggaaaaaataaatctaatggctgaga 40030069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 17943073 - 17942984
Alignment:
Q  66 tttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    |||||||||||| |  || ||||||||| ||||||| ||   || ||||| ||||||||| ||| ||||||| ||||||||| |||||||    
T  17943073 tttgctccatttcactttgctcaatttaccccatttgaagacatggatgtgtgacatgtgtaaataataaaatcaatggctgtgattaaa 17942984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 34587401 - 34587365
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaattta 93  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  34587401 gagttcatctttgctccatttaagtttcctcaattta 34587365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 38443667 - 38443623
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccattt 101  Q
    |||||||||||||||||||||||| || ||| ||||| |||||||    
T  38443667 gagtccatctttgctccatttaagtttgctccatttaccccattt 38443623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 29642400 - 29642523
Alignment:
Q  58 agtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaag 157  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| || | |||||| |||||||||||||||||| || |||||| || |||||||||    
T  29642400 agtccatttttgctccatttaagcttcctcaatttatcccatttcatatcaaagatgtgtgacatgtggaaaaaatagaatcaatggatgtgattaaaag 29642499  T
Q  158 ctttgaaaaatgcaattgtttaat 181  Q
     |||| ||||  ||||| ||||||    
T  29642500 atttggaaaagacaattctttaat 29642523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 35903690 - 35903818
Alignment:
Q  58 agtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgt--ggaaaaaataaaaccaatggctgagattaaa 155  Q
    |||| |||||||||||||||| | |  ||||||||| |||||||||| |||| ||||| ||||||||  ||||||||||||| |||||| || |||||||    
T  35903690 agtctatctttgctccatttaggttctctcaatttaccccatttcaagttatggatgtgtgacatgtggggaaaaaataaaatcaatggttgtgattaaa 35903789  T
Q  156 agctttgaaaaatgcaattgtttaatgaaa 185  Q
       |||| ||||||||||| ||||||||||    
T  35903790 ttgtttg-aaaatgcaattctttaatgaaa 35903818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 34936714 - 34936813
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    ||||| |||||||||||||||||  || |||| ||||||||| |||||  | |||||| | |||||||||| |||||||||||||||||||  |||||||    
T  34936714 cgagtgcatctttgctccatttaccatacctccatttatcccttttcacttcatagatttgtgacatgtggcaaaaataaaaccaatggcttggattaaa 34936813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 40810349 - 40810267
Alignment:
Q  62 catctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatgg 144  Q
    ||||||||||||||||||| |||||||||||||||||||| || | || ||||| |||||  ||| |||||||||| ||||||    
T  40810349 catctttgctccatttaagtttcctcaatttatcccattttaagtcatggatgtgtgacacatggcaaaaataaaatcaatgg 40810267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 44456698 - 44456774
Alignment:
Q  109 tagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaagctttgaaaaatgcaattgtttaatgaaa 185  Q
    |||||||  |||||||||||||||||||| ||||||||| |||||||||  ||||||||  ||||| ||||||||||    
T  44456698 tagatgtgagacatgtggaaaaaataaaatcaatggctgtgattaaaaggattgaaaaaaacaattctttaatgaaa 44456774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 3799832 - 3799931
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||||||||||||||||||||| | || ||||||||||||||||| ||   |||||||| |||||  ||| ||||||||| | || || |||||||||||    
T  3799832 gagtccatctttgctccattta-gcttgctcaatttatcccattttaatgcatagatgtgtgacacatggtaaaaataaatctaaaggttgagattaaaa 3799930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 55444649 - 55444553
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagatta 153  Q
    ||||||||||||||| ||||||||| | ||| ||||||||| |||||  |||| ||||| |||||||||| |||  ||||| ||| ||||| |||||    
T  55444649 gagtccatctttgcttcatttaagaatgctccatttatcccttttcactttattgatgtgtgacatgtggcaaatgtaaaaacaagggctgggatta 55444553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 34329358 - 34329457
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| ||||||||||||||||| |  | |||||||||||||||| |||   ||||||||||| ||||||| ||||| |||  ||| || |||||||||||    
T  34329358 gagttcatctttgctccatttaggcgtgctcaatttatcccattccaagacatagatgtatgtcatgtggcaaaaacaaattcaagggttgagattaaaa 34329457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 46461890 - 46461973
Alignment:
Q  84 cctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaagctttgaaaaa 167  Q
    |||| |||||| ||||||||  | || ||||| |||||||||| ||| |||||| ||||||||||||||||||| || ||||||    
T  46461890 cctccatttataccatttcatttcatggatgtttgacatgtggcaaatataaaatcaatggctgagattaaaagtttagaaaaa 46461973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 37886654 - 37886759
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||||||| |||||| |||||| | ||||||||||||| || |||||  |||| ||||| |||||||||| |||  ||||  ||| || || ||||||||    
T  37886654 gagtccatttttgcttcatttaggtttcctcaatttattccttttcactttattgatgtgtgacatgtggcaaatgtaaagtcaagggttgggattaaaa 37886753  T
Q  157 gctttg 162  Q
    ||||||    
T  37886754 gctttg 37886759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 44312438 - 44312393
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttatcccattt 101  Q
    ||||||||||||||||||||||| | |||||||||||| |||||||    
T  44312438 cgagtccatctttgctccatttatgtttcctcaatttaccccattt 44312393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 34330186 - 34330088
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    |||| ||||||||||||||||| |  | ||||||| |||||||| |||   ||||||||||||||||||| ||| | |||  ||| || ||||||||||    
T  34330186 gagttcatctttgctccatttaggtgtgctcaattgatcccattccaaggcatagatgtatgacatgtggcaaagacaaattcaagggttgagattaaa 34330088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 40809585 - 40809659
Alignment:
Q  63 atctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaa 137  Q
    |||||||||||||||  | ||||||||||||| |||||| || | || ||||| ||||| |||| ||||||||||    
T  40809585 atctttgctccatttgggtttcctcaatttattccattttaagtcatggatgtgtgacacgtggcaaaaataaaa 40809659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 178
Target Start/End: Original strand, 1772865 - 1772988
Alignment:
Q  55 ccgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtgg-aaaaaataaaaccaatggctgagatta 153  Q
    |||| ||||| ||||||||||||||| || ||||||||| |||||||   || || ||| | |||||||||| |||| | |||||||| || || |||||    
T  1772865 ccgaatccatatttgctccatttaagtttgctcaatttaccccatttactatcatggatatgtgacatgtggcaaaatagaaaaccaagggttgggatta 1772964  T
Q  154 aaagctttgaaaaatgcaattgttt 178  Q
    ||||  |||||||| ||| ||||||    
T  1772965 aaag-gttgaaaaaagcacttgttt 1772988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 23513688 - 23513732
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccattt 101  Q
    ||||||||||||||||||||||   || |||||||||||||||||    
T  23513688 gagtccatctttgctccatttatctttgctcaatttatcccattt 23513732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 50107568 - 50107668
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaa-ataaaaccaatggctgagattaaa 155  Q
    |||| ||||||| || |||||| | || ||||||||| |||||||   || || ||||| |||||||||| |||| | |||||||| |||||||||||||    
T  50107568 gagttcatctttactacatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggcaaaatagaaaaccaagggctgagattaaa 50107667  T
Q  156 a 156  Q
    |    
T  50107668 a 50107668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 7338867 - 7338739
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||||||||||||||||||||| | ||||||||||||  ||||||||| | |||||||| | ||||||||||||||||||| |||||| || ||||||||    
T  7338867 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtggaaaaaataaaatcaatggttgtgattaaaa 7338768  T
Q  157 gctttgaaaaatgcaattgtttaatgaaa 185  Q
    | | || |||| |||| | ||||||||||    
T  7338767 gttgtggaaaaggcaaatctttaatgaaa 7338739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 7338012 - 7338089
Alignment:
Q  60 tccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaa 137  Q
    |||||||||||||||||||   || |||||||||||||||||||| | |||||| | |||||||||||||||||||||    
T  7338012 tccatctttgctccatttatattttctcaatttatcccatttcaagtcatagatatgtgacatgtggaaaaaataaaa 7338089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 1764516 - 1764614
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    |||||||||||||||||||||||| || ||||||||| || ||||   || || |||||||||||||||| ||||||| || ||| || ||||||||||    
T  1764516 gagtccatctttgctccatttaagtttgctcaatttaccctatttatcatcatggatgtatgacatgtggcaaaaatataatcaaaggttgagattaaa 1764614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 2367612 - 2367513
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    ||||| |||||||||||||||| |  |||||||||||| |||||||| | | || ||||| ||||||||| | ||||||||| ||||||| | |||||||    
T  2367612 cgagtgcatctttgctccatttcactttcctcaatttaccccatttctagtaatggatgtgtgacatgtgtataaaataaaatcaatggccgtgattaaa 2367513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 49618303 - 49618362
Alignment:
Q  62 catctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgaca 121  Q
    ||||||||||||||||| | |||||||||||| |||||||||||  |||||||| |||||    
T  49618303 catctttgctccatttaggcttcctcaatttaccccatttcaaaccatagatgtctgaca 49618362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 49385084 - 49385159
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaa 131  Q
    ||||||||||||||||||||||||| || |   ||||| |||||||  ||| || ||||| |||||||||||||||    
T  49385084 cgagtccatctttgctccatttaagtttgcatcatttaccccatttacaatcatggatgtgtgacatgtggaaaaa 49385159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 7338698 - 7338650
Alignment:
Q  209 cttcaaccgcgacccttcttcttcctctcatcctcatctctgcttctcc 257  Q
    |||||| |||||||||||||||| |||||| ||||||| ||| ||||||    
T  7338698 cttcaatcgcgacccttcttctttctctcaccctcatcactgtttctcc 7338650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 27891355 - 27891311
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccattt 101  Q
    ||||||||||||||||||||||   || |||||||||||||||||    
T  27891355 gagtccatctttgctccatttatctttactcaatttatcccattt 27891311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 35752325 - 35752452
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    ||||| ||| ||||||||||||  | || |||||||||||||||||||| | ||||||||||||||||||| |||||||||| |||||| || |||||||    
T  35752325 cgagttcatgtttgctccattttggtttgctcaatttatcccatttcaa-tcatagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaa 35752423  T
Q  156 agctttgaaaaatgcaattgtttaatgaa 184  Q
    || |||||||||  || |||||| |||||    
T  35752424 aggtttgaaaaaaacatttgtttgatgaa 35752452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 35753138 - 35753023
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttat----cccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagat 151  Q
    ||||||||||||||||||||||| | || ||||||||||    |||||||||  | ||||||||||||||||||| |||||||||| ||||||||| |||    
T  35753138 cgagtccatctttgctccatttatgtttactcaatttatttaccccatttcacgtcatagatgtatgacatgtggcaaaaataaaatcaatggctgtgat 35753039  T
Q  152 taaaagctttgaaaaa 167  Q
    |||||| |||| ||||    
T  35753038 taaaagatttggaaaa 35753023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 5956439 - 5956567
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| |||||||||||||||| |  |||||||||||| |||||||| | | || ||||| ||||||||| | ||||||||| ||||||||| |||||||     
T  5956439 gagtgcatctttgctccatttcactttcctcaatttaccccatttctagtaatggatgtgtgacatgtgtataaaataaaatcaatggctgtgattaaat 5956538  T
Q  157 gctttgaaaaatgcaattgtttaatgaaa 185  Q
    |  ||| |||| |||||| || |||||||    
T  5956539 ggcttggaaaaagcaattcttaaatgaaa 5956567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 42253144 - 42253035
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| ||| ||||||||||||| ||  ||||||||||||||||| ||| |  ||||||| |||||| ||  |||||||||| ||| ||||||||||||||    
T  42253144 gagttcatgtttgctccatttatgaagcctcaatttatcccattccaactcttagatgtgtgacat-tgtcaaaaataaaaacaagggctgagattaaaa 42253046  T
Q  157 gctttgaaaaa 167  Q
    | |||||||||    
T  42253045 gatttgaaaaa 42253035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 48204147 - 48204248
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtgg-aaaaaataaaaccaatggctgagattaaa 155  Q
    |||||||||||||||||||||||| || ||| |||||||| ||||   || || |||||||||||||||| |||| | |||| ||| |||||||||||||    
T  48204147 gagtccatctttgctccatttaagtttgctccatttatcctatttaccatcatggatgtatgacatgtggcaaaagaaaaaatcaaaggctgagattaaa 48204246  T
Q  156 ag 157  Q
    ||    
T  48204247 ag 48204248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 5961061 - 5960933
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| |||||||||||||||| |  |||||||||||| |||||||| | | || ||||| ||||||||| | |||| |||| |||||||||  ||||||     
T  5961061 gagtgcatctttgctccatttcactttcctcaatttaccccatttctagtaatggatgtgtgacatgtgtataaaagaaaatcaatggctgtcattaaat 5960962  T
Q  157 gctttgaaaaatgcaattgtttaatgaaa 185  Q
    |  |||||||| |||||| || |||||||    
T  5960961 ggcttgaaaaaagcaattcttaaatgaaa 5960933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 43844794 - 43844892
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    |||| |||||||||||||||| |  || ||||||||| ||||||| ||   || ||||| ||||||||| ||||||||||| ||||||||| |||||||    
T  43844794 gagtgcatctttgctccatttcactttgctcaatttaccccatttaaagacatggatgtgtgacatgtgtaaaaaataaaatcaatggctgtgattaaa 43844892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 18947286 - 18947382
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagatta 153  Q
    |||| ||||||||||||||||| |   |||| |||||| ||||||||  | ||||||||  ||||||||| ||| ||||||||||||| ||||||||    
T  18947286 gagtgcatctttgctccatttagggagcctccatttataccatttcacttcatagatgttggacatgtggcaaatataaaaccaatggttgagatta 18947382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 25675815 - 25675716
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| ||||||||||||||||| | |  ||| |||||  || ||||||  ||||||||| |||||||||| |||||||||  |||||| |||||||||||    
T  25675815 gagttcatctttgctccatttatgttggctccatttactccttttcaatgtatagatgtgtgacatgtggtaaaaataaattcaatggttgagattaaaa 25675716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 18948322 - 18948222
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| ||||||||||||||||| |   |||  |||||| ||||||||  | || ||||| |||||||||| ||| ||||||  |||||||||||||||||    
T  18948322 gagtgcatctttgctccatttagggagccttcatttataccatttcacttcatggatgtttgacatgtggcaaatataaaattaatggctgagattaaaa 18948223  T
Q  157 g 157  Q
    |    
T  18948222 g 18948222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 39020961 - 39021060
Alignment:
Q  85 ctcaatttatcccatttcaaattatagatgtatgacatgtgg-aaaaaataaaaccaatggctgagattaaaagctttgaaaaatgcaattgtttaatga 183  Q
    ||||||||| ||||||||||   || ||||| |||||||||| ||||||||||| ||||||  | ||||||| | |||| |||| |||||| ||||||||    
T  39020961 ctcaatttaccccatttcaagacatggatgtgtgacatgtggaaaaaaataaaatcaatggtcgtgattaaatggtttggaaaaagcaattttttaatga 39021060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 43845949 - 43845830
Alignment:
Q  64 tctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaagctttga 163  Q
    |||||||||||||| |  || ||||||||| ||||||| ||   || |||||  ||||| |||||||||||||| |||||| || ||||||| |  |||     
T  43845949 tctttgctccatttcactttgctcaatttaccccatttgaagacatggatgtgcgacatatggaaaaaataaaatcaatggttgtgattaaatggcttgg 43845850  T
Q  164 aaaatgcaattgtttaatga 183  Q
    |||| |||||| ||||||||    
T  43845849 aaaaagcaattctttaatga 43845830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 16981314 - 16981237
Alignment:
Q  60 tccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaa 137  Q
    ||||||||||||||||||||| || ||| | ||| |||||||   |||||  |||| ||||||||||||||| |||||    
T  16981314 tccatctttgctccatttaagtttgctccaattaccccatttactattatgaatgtgtgacatgtggaaaaactaaaa 16981237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 120073 - 120172
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| |||||||||||||||||   |||||||||||| |||||||||| |||||||||  |||||| ||||||||||||||  ||||| |||||||||||    
T  120073 gagttcatctttgctccatttagctttcctcaatttaccccatttcaagttatagatgcgtgacatatggaaaaaataaaataaatggttgagattaaaa 120172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 40720410 - 40720317
Alignment:
Q  53 ctccgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggct 146  Q
    ||||| || |||||||||||||||||   ||||||||||| ||| |||| || |||||||||| ||||| |||||||||||| |||||| ||||    
T  40720410 ctccgggttcatctttgctccatttacctttcctcaatttttcctattttaagttatagatgtgtgacacgtggaaaaaatacaaccaaaggct 40720317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 33529735 - 33529834
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    ||||| ||||||||||||||||| ||  | ||||||||||||||||||| | |||||||  ||||||||||  ||| |||||| || |||||||||||||    
T  33529735 cgagttcatctttgctccatttaggaagcttcaatttatcccatttcaactcatagatgactgacatgtgg-caaactaaaacgaagggctgagattaaa 33529833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 43379553 - 43379432
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| ||||||||||||||||| ||   ||| |||||||||||| ||  |  ||||||| |||||||||| |||||||||| ||| || || ||||||||    
T  43379553 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa 43379454  T
Q  157 gctttgaaaaatgcaattgttta 179  Q
    | |||| ||||| ||||||||||    
T  43379453 ggtttggaaaat-caattgttta 43379432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 3636464 - 3636365
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| ||||||||||||||||||||   ||| |||| |||| |||||| | |||||||  ||||||||||||||| |||||  || || |||||||||||    
T  3636464 gagttcatctttgctccatttaagaaggctccatttttcccttttcaactcatagatgactgacatgtggaaaaattaaaattaagggttgagattaaaa 3636365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 2639717 - 2639786
Alignment:
Q  62 catctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaa 131  Q
    |||||||||||||||||   || ||||||||| |||||||||| |||||||||| | |||||| ||||||    
T  2639717 catctttgctccatttatttttgctcaatttaccccatttcaagttatagatgtgtaacatgtagaaaaa 2639786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 33530768 - 33530668
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    ||||| ||||||||||||||||   ||||||||||||| || ||||||   |||||||| |||||  | | ||||||||| |||| || |||||||||||    
T  33530768 gagtcaatctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaa 33530669  T
Q  157 g 157  Q
    |    
T  33530668 g 33530668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 29984840 - 29984794
Alignment:
Q  111 gatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaag 157  Q
    ||||| ||||||||| |||| | ||||||||||||||||||||||||    
T  29984840 gatgtttgacatgtgaaaaataaaaaaccaatggctgagattaaaag 29984794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 43378624 - 43378682
Alignment:
Q  109 tagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaagctttgaaaaa 167  Q
    ||||||| ||||| |||| |||||||||| ||| || |||||||||||| |||||||||    
T  43378624 tagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaaggtttgaaaaa 43378682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 6826557 - 6826686
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    ||||| |||||||||||||||| |  |||||||||||| |||||||| ||| || ||||| ||||||||| | |||| |||| ||||||||| |||||||    
T  6826557 cgagtgcatctttgctccatttcactttcctcaatttaccccatttctaataatggatgtgtgacatgtgtataaaagaaaatcaatggctgtgattaaa 6826656  T
Q  156 agctttgaaaaatgcaattgtttaatgaaa 185  Q
     |  ||| |||| |||||| || |||||||    
T  6826657 tggcttggaaaaagcaattcttaaatgaaa 6826686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 18065719 - 18065847
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| |||||||||||||||||  |  |||| ||||||||| ||| |  |||||||| |||||||||||| |||||||||||||||||||  |||||||     
T  18065719 gagtgcatctttgctccatttaccaaacctccatttatccctttttactttatagatatatgacatgtggcaaaaataaaaccaatggctaggattaaag 18065818  T
Q  157 gctttgaaaaatgcaattgtttaatgaaa 185  Q
      |||  |||||| ||||||||| |||||    
T  18065819 attttataaaatgtaattgtttagtgaaa 18065847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 184
Target Start/End: Complemental strand, 34262254 - 34262128
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| ||||||||||||||||    |||||||||||| ||||||| || |||| ||||| ||||||||| | ||||||||   |||||||| |||||||     
T  34262254 gagttcatctttgctccattttcctttcctcaatttaccccattttaagttatggatgtgtgacatgtgtataaaataaattgaatggctgtgattaaat 34262155  T
Q  157 gctttgaaaaatgcaattgtttaatgaa 184  Q
    |||| |||||| |||||| |||||||||    
T  34262154 gcttggaaaaa-gcaattctttaatgaa 34262128  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 6830057 - 6829929
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| |||||||||||||||| |  |||||||||||| |||||||| | | || ||||| ||||||||| | |||| |||| ||||||||| |||||||     
T  6830057 gagtgcatctttgctccatttcactttcctcaatttaccccatttctagtaatggatgtgtgacatgtgtataaaagaaaatcaatggctgtgattaaat 6829958  T
Q  157 gctttgaaaaatgcaattgtttaatgaaa 185  Q
    |  ||| |||| |||||| || |||||||    
T  6829957 ggcttggaaaaagcaattcttaaatgaaa 6829929  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 34260116 - 34260243
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||||||||||||||||||||    |||||||||||| |||||||||| | || ||||| ||||||||| ||||| ||||   ||||| || |||||||     
T  34260116 gagtccatctttgctccattttcctttcctcaatttaccccatttcaagtcatggatgtgtgacatgtgtaaaaattaaattgaatggttgtgattaaat 34260215  T
Q  157 gctttgaaaaatgcaattgtttaatgaa 184  Q
    |  ||||||||  ||||| |||||||||    
T  34260216 gacttgaaaaaaacaattctttaatgaa 34260243  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 28548463 - 28548380
Alignment:
Q  58 agtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaa 141  Q
    ||||||||||| |||||||||   || ||||||||||| |||||   ||||| ||||| ||||||||||  |||||||||||||    
T  28548463 agtccatctttactccatttacttttgctcaatttatctcatttatcattatggatgtgtgacatgtggccaaaataaaaccaa 28548380  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 13207398 - 13207456
Alignment:
Q  109 tagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaagctttgaaaaa 167  Q
    ||||||| ||||| |||| |||||||||| ||| || |||||||||||| |||||||||    
T  13207398 tagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaagatttgaaaaa 13207456  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 18066356 - 18066257
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| ||||||||||||||||    |||||||||||| ||||||| || | |||||||| |||||| ||| ||||||||  | || ||||| ||||||||    
T  18066356 gagttcatctttgctccattttgctttcctcaattta-cccattttaagtcatagatgtctgacatttggcaaaaataagtctaacggctgtgattaaaa 18066258  T

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Target: scaffold0151 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 20792 - 20850
Alignment:
Q  109 tagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaagctttgaaaaa 167  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  20792 tagatgtgtgacatgtggtaaaaataaaaccaatggctgagattaaaaggtttggaaaa 20850  T

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Target: scaffold0178 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 18481 - 18591
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||||||||||| ||||||||||| ||  ||||||||  ||||||   || || ||||| |||||||||||| |||| |||| || ||||||||||||||    
T  18481 gagtccatctttactccatttaagtttgttcaatttacaccatttaccatcatggatgtgtgacatgtggaataaattaaacaaagggctgagattaaaa 18580  T
Q  157 gctttgaaaaa 167  Q
     ||| ||||||    
T  18581 ccttagaaaaa 18591  T

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Target: scaffold0330 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 12517 - 12622
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| ||||||||||| ||||||| ||||||||||||| || |||||  |||| | ||| |||||||||| |||  ||||| ||| || || ||||||||    
T  12517 gagttcatctttgctctatttaagtttcctcaatttattccttttcactttattgttgtgtgacatgtggcaaatgtaaaaacaagggttgggattaaaa 12616  T
Q  157 gctttg 162  Q
    ||||||    
T  12617 gctttg 12622  T

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Target: scaffold0330; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 13306 - 13205
Alignment:
Q  61 ccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaagctt 160  Q
    |||||||||||||||||| | ||||||||||||| || |||||  |||| ||||| |||||||||| |||  ||||  ||| || || ||||||||||||    
T  13306 ccatctttgctccatttaggtttcctcaatttattccttttcactttattgatgtgtgacatgtggcaaatttaaagtcaagggttgggattaaaagctt 13207  T
Q  161 tg 162  Q
    ||    
T  13206 tg 13205  T

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Target: scaffold0402 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 10855 - 10954
Alignment:
Q  56 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 155  Q
    ||||| |||||||||||||||| |  || ||||||||| ||||||| ||   || ||||| ||||||||| ||| |||| || ||||||||| |||||||    
T  10855 cgagtgcatctttgctccatttcactttgctcaatttaccccatttgaagacatggatgtgtgacatgtgtaaataatagaatcaatggctgtgattaaa 10954  T

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Target: scaffold0098 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 52264 - 52363
Alignment:
Q  57 gagtccatctttgctccatttaagattcctcaatttatcccatttcaaattatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 156  Q
    |||| ||||||||||||||||  | |||||| |||||  || ||||||   |||||||| |||||||||  ||||| ||| ||||||| |||||||||||    
T  52264 gagttcatctttgctccatttttgtttcctccatttactccttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatggttgagattaaaa 52363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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