View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9627_2 (Length: 603)
Name: NF9627_2
Description: NF9627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9627_2 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 48 - 324
Target Start/End: Complemental strand, 12867537 - 12867255
Alignment:
| Q |
48 |
ataacaattaatctcgttaaggaattgatattgagagttaactcaaaattttatcacatacaca--aaatattttattttatttctatattaccaataaa |
145 |
Q |
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| T |
12867537 |
ataacaattaatctcgttaaggaattgatattgagagttaactcaaaattttatcacatacacataaaatattttattttatttctatattaccaataaa |
12867438 |
T |
|
| Q |
146 |
agtgatcaaataaaatattttgttaccataagatctcttttaatgtatgtcatttggatcacacacacgaagaagttcttatcagaataaaacttgttct |
245 |
Q |
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| T |
12867437 |
agtgatcaaataaaatattttgttaccataagatctcttttaatgtatgtcatttggatcac--acacgaagaagttcttatcagaatgaaacttgttct |
12867340 |
T |
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| Q |
246 |
tgactttatcatacaaaacttggcttcgctccttaagatcatc------accactaattcctcctaagaaattgagtaattcacc |
324 |
Q |
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| T |
12867339 |
tcactttatcatacaaaacttggcttcgctccttaagatcatcacaactacaactagttcctgctaagaaattgagtaattcacc |
12867255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 419 - 580
Target Start/End: Complemental strand, 12867161 - 12867000
Alignment:
| Q |
419 |
ccaaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttc |
518 |
Q |
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| T |
12867161 |
ccaaccattgtccacatccttaaaattatgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcttctggattgtttttc |
12867062 |
T |
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| Q |
519 |
atcttcttagaaactccagaatctggtgatgaagattttggccttttacctcgccgtgatga |
580 |
Q |
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| T |
12867061 |
atcttcttagaaactccagaagacggtgatgaagattttggccttttacctcgccgtgatga |
12867000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 421 - 532
Target Start/End: Complemental strand, 15134395 - 15134284
Alignment:
| Q |
421 |
aaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttcat |
520 |
Q |
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||||||||| || ||||||||||||| ||||| |||| || | ||||| | || |||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
15134395 |
aaccattgttcatatccttaaaattatgaaattttgcttgagattggaatattttcttctcatgcttagattctttttgttcctctgggttgattttcat |
15134296 |
T |
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| Q |
521 |
cttcttagaaac |
532 |
Q |
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||||||| |||| |
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| T |
15134295 |
cttcttacaaac |
15134284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 15134662 - 15134613
Alignment:
| Q |
147 |
gtgatcaaataaaatattttgttaccataagatctcttttaatgtatgtc |
196 |
Q |
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| T |
15134662 |
gtgatcaaataaaatagtttgttaccaaaagatctctctcaatgtgtgtc |
15134613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 143 - 301
Target Start/End: Complemental strand, 49743292 - 49743134
Alignment:
| Q |
143 |
aaaagtgatcaaataaaatattttgttaccataagatctcttttaatgtatgtcatttggatcacacacacgaagaagttcttatcagaataaaacttgt |
242 |
Q |
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||||||||||||||||||| ||||||||||| | |||| | |||||||||||| ||||||||| ||||| |||||| | | |||||| | || | |
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| T |
49743292 |
aaaagtgatcaaataaaatgttttgttaccaagacatctttcttaatgtatgtcttttggatcatacacatgaagaaatccatatcagcgtggaaaaaat |
49743193 |
T |
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| Q |
243 |
tcttgactttatcatacaaaacttggcttcgctccttaagatcatcaccactaattcct |
301 |
Q |
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|||| ||||| || |||||||||| ||||| ||||||||||||||||| |||| ||||| |
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| T |
49743192 |
tcttcactttgtcgtacaaaactttgcttctctccttaagatcatcacaactacttcct |
49743134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 523
Target Start/End: Complemental strand, 49743020 - 49742916
Alignment:
| Q |
419 |
ccaaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttc |
518 |
Q |
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||||||||||||| |||||| || ||| |||| ||| | ||| ||||||||||||||||||||||||||| |||||||||||| | || ||| ||||| |
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| T |
49743020 |
ccaaccattgtccgtatccttgaagttaagaaaccttccttgttcttggacttttctcttctcatgcttaggttctttttgttcttttgaattgattttc |
49742921 |
T |
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| Q |
519 |
atctt |
523 |
Q |
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||||| |
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| T |
49742920 |
atctt |
49742916 |
T |
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