View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9627_3 (Length: 574)
Name: NF9627_3
Description: NF9627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9627_3 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 203 - 545
Target Start/End: Complemental strand, 53679605 - 53679263
Alignment:
| Q |
203 |
acctgcttaatcaacattgaatcacctttcttactttcgtttgattttcttgaaaatccatccatttagatcagaaatagaacctaattgaattgatttt |
302 |
Q |
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| T |
53679605 |
acctgcttaatcaacaccgaatcacctttcttactttcgtttgattttcttgaaaatccatccatttagatcagaaatagaacctaattgaattgatttt |
53679506 |
T |
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| Q |
303 |
acatgcttaatcaactcccttcatgattcttgaattgtttgattgaaagattggtaaaaagtttcaattttgttcaccacgtttaacgttttaaatatgt |
402 |
Q |
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| T |
53679505 |
acatgcttaatcaactcccttcatgattcttgaattgtttgattgaaagattggtaaaaaatttcaattttgttcaccatgtttaacgttttaaatatgt |
53679406 |
T |
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| Q |
403 |
catgtttcagttctgtttttaagctagttatattctggttcaatttcacttcttgttaaaacagttcagttagtaaccagaccttttcatatggttcagt |
502 |
Q |
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| T |
53679405 |
tatgtttcagttttgtttttaagctagttatattctggttcaatttcagttcttgttaaaacagttcagttagtaaccagaccttttcatatggttcagt |
53679306 |
T |
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| Q |
503 |
ctgaacatttataaaccagtttagtttaataacagtttggttc |
545 |
Q |
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| T |
53679305 |
ctgaacatttataaaccagtttagttcaataacagtttggttc |
53679263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 53679794 - 53679678
Alignment:
| Q |
14 |
gaacctgtgtgtatagatcttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaacaatcttcacatatttctacttttcatgaaatc |
113 |
Q |
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| T |
53679794 |
gaacctgtgtgtatagatcttcttccctttcttctcttccatgtaaatccaaataccattcatttaacaatcttcacttatttctacttttcatgaaatc |
53679695 |
T |
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| Q |
114 |
atcattctcaatctccc |
130 |
Q |
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| T |
53679694 |
gtcattctcaatctccc |
53679678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 19266145 - 19266212
Alignment:
| Q |
18 |
ctgtgtgtatagatcttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaacaatc |
85 |
Q |
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| T |
19266145 |
ctgtgtgtacggatcttcttccttttcttctcttctctgtaaatccaaattccattcattcaacaatc |
19266212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 32375198 - 32375255
Alignment:
| Q |
23 |
tgtatagatcttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaa |
80 |
Q |
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| T |
32375198 |
tgtatggatcttcttccttttcttctcttctctgtaaatccaaatatcattcattcaa |
32375255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 502
Target Start/End: Original strand, 2045022 - 2045066
Alignment:
| Q |
458 |
ttaaaacagttcagttagtaaccagaccttttcatatggttcagt |
502 |
Q |
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| T |
2045022 |
ttaaaacagttcagctaataaccaatccttttcatatggttcagt |
2045066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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