View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9627_4 (Length: 498)
Name: NF9627_4
Description: NF9627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9627_4 |
 | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0214 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 11897405 - 11896948
Alignment:
| Q |
19 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| |
|
|
| T |
11897405 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagc |
11897306 |
T |
|
| Q |
119 |
tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11897305 |
tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc |
11897206 |
T |
|
| Q |
219 |
caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatccc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11897205 |
caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcct |
11897106 |
T |
|
| Q |
319 |
agttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaac |
418 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11897105 |
agttgacgttgtcaaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaac |
11897006 |
T |
|
| Q |
419 |
aatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11897005 |
aatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
11896948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 476
Target Start/End: Original strand, 26432588 - 26433045
Alignment:
| Q |
19 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagc |
118 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||| || ||| |||||||||||||| ||| || ||||| |||||||| |
|
|
| T |
26432588 |
ggacatcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagc |
26432687 |
T |
|
| Q |
119 |
tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc |
218 |
Q |
| |
|
|| |||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||| |
|
|
| T |
26432688 |
ggatagcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattc |
26432787 |
T |
|
| Q |
219 |
caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatccc |
318 |
Q |
| |
|
|||||||||||||| | | |||| || |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| || |||| |
|
|
| T |
26432788 |
caaagtatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtgatgtctggaaacccaaaatcatggaggcagttgcttagaaattccc |
26432887 |
T |
|
| Q |
319 |
agttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaac |
418 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||||||| |||||||| ||||||| ||||| || || |||||||||||||| ||||||||||||||| |
|
|
| T |
26432888 |
agttgacgttgtcaaaagctttctctagatcaagcttgaaagctacgaaaccctttttcctcttcgatctcttcatgaaatgaaaaatttcctgcaaaac |
26432987 |
T |
|
| Q |
419 |
aatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||||||||||| || |||||||||||||| || |||||||||||||| |||||| |
|
|
| T |
26432988 |
aatagagttatctgcggtacccctaccaggcaggaaactgctttgataggggccaata |
26433045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 120 - 463
Target Start/End: Complemental strand, 23424654 - 23424311
Alignment:
| Q |
120 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc |
219 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| | ||||||||||| |||| ||||| || |||| |
|
|
| T |
23424654 |
gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttacctttcc |
23424555 |
T |
|
| Q |
220 |
aaagtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatccc |
318 |
Q |
| |
|
| | ||| ||| | | |||| || | || ||||| |||||||||||||||||||||| ||||| ||||| || || ||||| | |||||||||| |
|
|
| T |
23424554 |
ataatattgagaatgt-ggaggaggtgacacaatgtatgatgagcttgatggtgatgtctggaaaaccaaattcctgaaggcaagaattaaggaaatccc |
23424456 |
T |
|
| Q |
319 |
agttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaac |
418 |
Q |
| |
|
| |||| || ||||| |||||||||||||| |||||| |||| || ||||| |||||||| || || | | ||||||| |||||||||||||||||||| |
|
|
| T |
23424455 |
atctgacattatcgaatgctttctccaagtctagcttgaaagcaacataacctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaac |
23424356 |
T |
|
| Q |
419 |
aatagagttatctgcagtgcccctaccaggcagaaagctgctttg |
463 |
Q |
| |
|
||| |||||||| | ||| ||||||| ||||||||| |||||||| |
|
|
| T |
23424355 |
aattgagttatcagaagttcccctactaggcagaaatctgctttg |
23424311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 123 - 476
Target Start/End: Original strand, 38647179 - 38647532
Alignment:
| Q |
123 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
222 |
Q |
| |
|
|||||||||||||| | ||||| || || || || | |||||||||||||| ||| || || |||||||| ||||| |||| || || |||||||||| |
|
|
| T |
38647179 |
agcttttccatgcataaaatgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagggggcattttattaccgttccaaa |
38647278 |
T |
|
| Q |
223 |
gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagtt |
322 |
Q |
| |
|
| |||||| | | | || | || |||||||||||||||||||||||||||| ||||| ||||||||||| ||||| | ||||| |||||||| |
|
|
| T |
38647279 |
gaatagagaaggtggatgatgaaacacaatgcatgatgagcttgatggtgatgtctggaaaaccaaaatcatgcaggcaagaattaaggaagtcccagtt |
38647378 |
T |
|
| Q |
323 |
gacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaata |
422 |
Q |
| |
|
||| || || |||||||| |||| |||||| ||| | | ||| |||||||| || |||| || | |||||||||| | |||||||||||||||||| |
|
|
| T |
38647379 |
gacattatcaaaagctttttccaggtcaagtttgaatgttacataaccctttttatttttggattttctcatgaaatgtacaatttcctgcaaaacaatt |
38647478 |
T |
|
| Q |
423 |
gagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|| ||||| | || || |||||||||||||| ||||||||||| | |||||| |
|
|
| T |
38647479 |
gaattatcagatgttcctctaccaggcagaaaaatgctttgatagaggccaata |
38647532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 252 - 472
Target Start/End: Original strand, 11889865 - 11890085
Alignment:
| Q |
252 |
tgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaa |
351 |
Q |
| |
|
|||||||||||||| ||||| || | || || ||||| ||||||||||| |||| ||||||||||||||| || || ||||||||||| | ||||| |
|
|
| T |
11889865 |
tgcatgatgagctttatggtaatatctgggaaaccaaagtcatggaggcaagcacttaagaaatcccagttgacattatcaaaagctttctctaggtcaa |
11889964 |
T |
|
| Q |
352 |
gcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcag |
451 |
Q |
| |
|
| ||| ||||||| || || |||||| | ||||| || ||| || || | |||||||||||||||||||| ||| || || ||||||||||| ||||| |
|
|
| T |
11889965 |
gtttgaaagctacatagcctttcttcttcttagatctctacataaagtgtacaatttcctgcaaaacaatagtgttgtcagccgtgcccctacctggcag |
11890064 |
T |
|
| Q |
452 |
aaagctgctttgatagggacc |
472 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
11890065 |
gaagctgctttggtagggacc |
11890085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 476
Target Start/End: Original strand, 17718481 - 17718708
Alignment:
| Q |
249 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
348 |
Q |
| |
|
||||||||||||||||||||||||| || ||| || |||||||| || || || | | || |||||||| ||||| || || || |||||||| | || |
|
|
| T |
17718481 |
caatgcatgatgagcttgatggtgacgtccgggaaaccaaaatcctgcagacaagagttaagaaaatcccaattgacattatcaaaggctttctcaaggt |
17718580 |
T |
|
| Q |
349 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
448 |
Q |
| |
|
| |||||| |||| || ||||| || ||| | ||||| ||||| ||||||| ||||||||||||||||| |||||||| | ||| ||||||||||| |
|
|
| T |
17718581 |
ctagcttgaaagccacataaccttttttcttcttagatcttctcatgtaatgaatgatttcctgcaaaacaatggagttatcagaagttcccctaccagg |
17718680 |
T |
|
| Q |
449 |
cagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||||||||||| || || |||||| |
|
|
| T |
17718681 |
cagaaagctgctttggtaagggccaata |
17718708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 476
Target Start/End: Original strand, 19019710 - 19019937
Alignment:
| Q |
249 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
348 |
Q |
| |
|
||||||||||||||||||||||||| || ||| || |||||||| || || || | | || |||||||| ||||| || || || |||||||| | || |
|
|
| T |
19019710 |
caatgcatgatgagcttgatggtgacgtccgggaaaccaaaatcctgcagacaagagttaagaaaatcccaattgacattatcaaaggctttctcaaggt |
19019809 |
T |
|
| Q |
349 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
448 |
Q |
| |
|
| |||||| |||| || ||||| || ||| | ||||| ||||| ||||||| ||||||||||||||||| |||||||| | ||| ||||||||||| |
|
|
| T |
19019810 |
ctagcttgaaagccacataaccttttttcttcttagatcttctcatgtaatgaatgatttcctgcaaaacaatggagttatcagaagttcccctaccagg |
19019909 |
T |
|
| Q |
449 |
cagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||||||||||| || || |||||| |
|
|
| T |
19019910 |
cagaaagctgctttggtaagggccaata |
19019937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 162 - 463
Target Start/End: Original strand, 53608336 - 53608637
Alignment:
| Q |
162 |
ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatga |
261 |
Q |
| |
|
|||||||| |||| ||| ||||| |||||| |||||| |||| ||||| || |||||||| |||||| | ||| || | || ||||||||||||| |
|
|
| T |
53608336 |
ggatcaccctgtctgagaccatgtgaaggcctgaaagaaggcattttgtttccattccaaagaatagagaaggtagaggaggaaacacaatgcatgatga |
53608435 |
T |
|
| Q |
262 |
gcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagc |
361 |
Q |
| |
|
||||||||||||||| || || |||||||| || ||||| | || |||||||| ||||| || || ||||||||||| | || |||||| |||| |
|
|
| T |
53608436 |
gcttgatggtgatgtctgggaaaccaaaatcctgtaggcaaaaattaagaaaatcccaattgacattatcaaaagctttctcaagatcgagcttgaaagc |
53608535 |
T |
|
| Q |
362 |
tacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctt |
461 |
Q |
| |
|
|| || || || ||| | || || ||||| ||||||||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
53608536 |
cacatagccttttttcttctttgatcttttcatataatgaataatttcctgcaaaacaatggagttatcagaagttcccctaccaggcagaaagctgctt |
53608635 |
T |
|
| Q |
462 |
tg |
463 |
Q |
| |
|
|| |
|
|
| T |
53608636 |
tg |
53608637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 472
Target Start/End: Original strand, 49150035 - 49150116
Alignment:
| Q |
391 |
tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggacc |
472 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||| || ||||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
49150035 |
tcatgaaatgaacaatttcctgcaaaacaattgagttgtcattagtgcccctaccaggcagaaaactgctctaatagggacc |
49150116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 476
Target Start/End: Original strand, 15473656 - 15473795
Alignment:
| Q |
336 |
gctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcag |
435 |
Q |
| |
|
||||| |||| ||||||| || |||| || |||||||| |||||||| || ||||| ||||| | |||||||||||||||||| |||||||| | || |
|
|
| T |
15473656 |
gctttttccaggtcaagcctgaaagccacataaccctttttccttttggatcttttcataaaatgtacaatttcctgcaaaacaattgagttatcagaag |
15473755 |
T |
|
| Q |
436 |
tgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
| ||| ||||||||||||| || ||||||||||| |||||| |
|
|
| T |
15473756 |
taccc-taccaggcagaaaactactttgataggggccaata |
15473795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 475
Target Start/End: Original strand, 3659894 - 3659964
Alignment:
| Q |
405 |
atttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaat |
475 |
Q |
| |
|
||||||||||||||||| || || || | |||||||||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
3659894 |
atttcctgcaaaacaatcgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaat |
3659964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 49149802 - 49149851
Alignment:
| Q |
162 |
ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgtt |
211 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||| ||||||| ||||| |
|
|
| T |
49149802 |
ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgtt |
49149851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 476
Target Start/End: Original strand, 55025080 - 55025149
Alignment:
| Q |
407 |
ttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||||||||||| || || || | |||||||||||||| ||||| || ||||||||||| |||||| |
|
|
| T |
55025080 |
ttcctgcaaaacaattgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaata |
55025149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Original strand, 23132475 - 23132932
Alignment:
| Q |
19 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
23132475 |
ggacatcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc |
23132574 |
T |
|
| Q |
119 |
tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23132575 |
tgaaagcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc |
23132674 |
T |
|
| Q |
219 |
caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatccc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23132675 |
caaagtatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatccc |
23132774 |
T |
|
| Q |
319 |
agttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23132775 |
agttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaac |
23132874 |
T |
|
| Q |
419 |
aatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23132875 |
aatagagttatctgcagtgcccctaccaagcagaaagctgctttgatagggaccaata |
23132932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 120 - 476
Target Start/End: Complemental strand, 26587380 - 26587024
Alignment:
| Q |
120 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc |
219 |
Q |
| |
|
||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||||| ||||||||| || ||||| ||||| || || | |
|
|
| T |
26587380 |
gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc |
26587281 |
T |
|
| Q |
220 |
aaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatccca |
319 |
Q |
| |
|
|||| || | | | ||| |||| ||||||||||||||||| ||||||| | || |||||||| |||||||| || || | | || || ||||| |
|
|
| T |
26587280 |
aaaggatggtgaaggtagatgaagtgacgcaatgcatgatgagtttgatggcggcgtcaggaaatccgaaatcatgaagacaagtattaagaaactccca |
26587181 |
T |
|
| Q |
320 |
gttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaaca |
419 |
Q |
| |
|
||| || ||||| || |||||||| | ||||||||| |||| || || || |||||||| ||||| | | |||| || ||| |||||||||||||||| |
|
|
| T |
26587180 |
gttaacattgtcaaatgctttctcaagatcaagcttgaaagcaacatagcctttcttcctcttagatttcctcataaagtgagcaatttcctgcaaaaca |
26587081 |
T |
|
| Q |
420 |
atagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
| |||||| || |||||||||||| |||||||| ||| |||| |||||||||||| |
|
|
| T |
26587080 |
aaagagttgtcataagtgcccctacctggcagaaaactgatttggtagggaccaata |
26587024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 309 - 476
Target Start/End: Complemental strand, 14759889 - 14759722
Alignment:
| Q |
309 |
aggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataattt |
408 |
Q |
| |
|
||||| |||||||| || ||||| |||||||| |||| ||||| ||| ||||||| | ||||||||| |||| || | ||||||||||||| |||| |
|
|
| T |
14759889 |
aggaattcccagtttactttgtcaaaagctttttccaggtcaattttgaaagctacaaaccccttcttctttttggatctcctcatgaaatgaattattt |
14759790 |
T |
|
| Q |
409 |
cctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||| ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
14759789 |
cctgcaaaacaatggagttatcagaagtgcccctcccaggcagaaaactgctttggtaggggccaata |
14759722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 309 - 476
Target Start/End: Complemental strand, 26973420 - 26973253
Alignment:
| Q |
309 |
aggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataattt |
408 |
Q |
| |
|
||||| |||||||| || ||||| |||||||| |||| |||||| ||| ||||||| | ||||||||| |||| || | ||||||||||||| |||| |
|
|
| T |
26973420 |
aggaattcccagtttactttgtcaaaagctttttccaggtcaagtttgaaagctacaaaccccttcttctttttggatctcctcatgaaatgaattattt |
26973321 |
T |
|
| Q |
409 |
cctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||||||||| |||||||| | |||||||| ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
26973320 |
cctgcaaaacaatggagttatcagaggtgcccctcccaggcagaaaactgctttggtaggggccaata |
26973253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 404 - 476
Target Start/End: Complemental strand, 38348339 - 38348267
Alignment:
| Q |
404 |
aatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||||||||||| |||||| ||||| | ||| |||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
38348339 |
aatttcctgcaaaataatagaattatcagaagttcccctaccaggcaggaagctgctttgataggggccaata |
38348267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 14760174 - 14760016
Alignment:
| Q |
24 |
tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagctgaaa |
123 |
Q |
| |
|
|||||||||||||| || || |||| || ||||||||| |||||||| | ||| |||| |||||||| ||| ||||| || |||||| || | |
|
|
| T |
14760174 |
tcatctgcaaatagtaggtgagatatctggggccccgtatttgtgatttgaaccggttcccaacttccttgattgaccgctgaatttatagcaatagaga |
14760075 |
T |
|
| Q |
124 |
gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggcca |
182 |
Q |
| |
|
|||||||||| ||||| ||||| || || |||||||||||||| ||||| || |||||| |
|
|
| T |
14760074 |
gcttttccatacaaagaatgaagaggtatggggacaacggatctccttggcgaaggcca |
14760016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 20285106 - 20284649
Alignment:
| Q |
19 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
20285106 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc |
20285007 |
T |
|
| Q |
119 |
tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
20285006 |
tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttc |
20284907 |
T |
|
| Q |
219 |
caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatccc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20284906 |
caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttagaaaatccc |
20284807 |
T |
|
| Q |
319 |
agttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20284806 |
agttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgtttcatgaaatgaataatttcctgcaaaac |
20284707 |
T |
|
| Q |
419 |
aatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20284706 |
aatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
20284649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 111 - 476
Target Start/End: Original strand, 50236550 - 50236915
Alignment:
| Q |
111 |
atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt |
210 |
Q |
| |
|
|||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
50236550 |
atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt |
50236649 |
T |
|
| Q |
211 |
tcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttag |
310 |
Q |
| |
|
|||||||||| | |||||||| | || || | || |||||||||||||| ||| ||||||||| ||||||||||||||||||||| || | || |
|
|
| T |
50236650 |
tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtgatgtccggaaatccaaaatcatggagacaagaattgag |
50236749 |
T |
|
| Q |
311 |
gaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgct-tcatgaaatgaataatttc |
409 |
Q |
| |
|
||| ||| | || || || || ||||| || ||||| |||||||| ||||||| || |||||||| ||||| || | | |||||||||||| |||||| |
|
|
| T |
50236750 |
gaagtcctaattaacattatcaaaagccttttccaaatcaagcttaaaagctacatagcccttctttctttt-gaatcttctcatgaaatgaacaatttc |
50236848 |
T |
|
| Q |
410 |
ctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||||||||| |||||||| | || ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50236849 |
ctgcaaaacaatcgagttatcagatgtacccctaccaggcagaaaaatgctttgatagggaccaata |
50236915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 123 - 476
Target Start/End: Complemental strand, 50452048 - 50451695
Alignment:
| Q |
123 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
222 |
Q |
| |
|
||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| |||||| ||||| || ||||| | |
|
|
| T |
50452048 |
agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccata |
50451949 |
T |
|
| Q |
223 |
gtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagt |
321 |
Q |
| |
|
|||||| || | |||| || | || ||||||||||| || ||||||||||||| |||||| ||||| ||||| ||||| | || |||||||| | |
|
|
| T |
50451948 |
agatagagaaagt-ggaggaggtgacacaatgcatgataagtttgatggtgatgtccggaaaaccaaactcatgaaggcaagaattaagaaaatcccatt |
50451850 |
T |
|
| Q |
322 |
tgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaat |
421 |
Q |
| |
|
|||| || || || ||||| ||||| || |||||| |||| || ||||| || ||| | ||||| | | |||| |||||||||||||||||||||||||| |
|
|
| T |
50451849 |
tgacattatcaaatgctttttccaaatcgagcttgaaagcaacataaccttttttcttcttagacttcctcataaaatgaataatttcctgcaaaacaat |
50451750 |
T |
|
| Q |
422 |
agagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||||| | ||| ||||||| |||||||||||||||||| || || |||||| |
|
|
| T |
50451749 |
agagttatcagaagttcccctactaggcagaaagctgctttggtaagggccaata |
50451695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 253 - 476
Target Start/End: Original strand, 31325079 - 31325302
Alignment:
| Q |
253 |
gcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaag |
352 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| || |||||||||||||| | ||||||||||| ||||| || || ||||||||||||| |||||| |
|
|
| T |
31325079 |
gcatgatgagcttgattgtgatgtctggaaaaccgaaatcatggaggcaagaattaaggaaatcccaattgacattatcaaaagctttctccaggtcaag |
31325178 |
T |
|
| Q |
353 |
cttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcaga |
452 |
Q |
| |
|
||| |||||||||||||||||||| | || || ||||||| || | |||||||||||||||||| |||||||| | ||| ||||||||||||||| |
|
|
| T |
31325179 |
tttgaaagctacgtaacccttcttcttcttggatcttctcatgaagtggacaatttcctgcaaaacaattgagttatcagaagttcccctaccaggcaga |
31325278 |
T |
|
| Q |
453 |
aagctgctttgatagggaccaata |
476 |
Q |
| |
|
|| |||||| | ||||| |||||| |
|
|
| T |
31325279 |
aaactgcttcggtaggggccaata |
31325302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 123 - 468
Target Start/End: Original strand, 10103677 - 10104022
Alignment:
| Q |
123 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
222 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| || | |||| ||||||||| ||| |||| | ||||||||| |||| ||||| |||||||| | |
|
|
| T |
10103677 |
agcttctccatgcaaaggatgaataggtaaggagagagcggaacaccttgtctgagaccatatgtaggcttgaactagggcattttgttaccgttccata |
10103776 |
T |
|
| Q |
223 |
gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagtt |
322 |
Q |
| |
|
|||||| || | | ||| |||||||||||||| || ||||||||||| | | ||||||||| || || ||||| | ||||| ||||| | |
|
|
| T |
10103777 |
aaatagagaaagttgataaagtgacgcaatgcatgataagtttgatggtgatatctgaaaatccaaactcttgaaggcaagaattaaggaagtcccatct |
10103876 |
T |
|
| Q |
323 |
gacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaata |
422 |
Q |
| |
|
||| ||||| | || |||||| || || |||||| |||| || || ||||||||| | ||||| | | | ||||||| ||||||||||||||||||||| |
|
|
| T |
10103877 |
gacattgtcaatagttttctctaaatcgagcttgaaagcaacatagcccttcttcttcttagatttccttatgaaataaataatttcctgcaaaacaatt |
10103976 |
T |
|
| Q |
423 |
gagttatctgcagtgcccctaccaggcagaaagctgctttgatagg |
468 |
Q |
| |
|
|||||||| || || |||||||||||||||||||| |||||||||| |
|
|
| T |
10103977 |
gagttatcagccgttcccctaccaggcagaaagctactttgatagg |
10104022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 476
Target Start/End: Complemental strand, 43298385 - 43298158
Alignment:
| Q |
249 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
348 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||||| |||||| |||| |||||||| ||||| || | |||||||||| || || |
|
|
| T |
43298385 |
caatgcatgataagcttcatggtgatgttcgagaatccaaaatcaatgaggcaagaatttagaaaatcccatttgacattattaaaagctttcttcaggt |
43298286 |
T |
|
| Q |
349 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
448 |
Q |
| |
|
|||| ||| | ||||| || ||||||||| ||||||| |||| ||||||| ||||||||||||||||| |||||||| | ||| ||||||| ||| |
|
|
| T |
43298285 |
caagtttgaaggctacatatcccttcttctttttagatcttctcataaaatgaactatttcctgcaaaacaattgagttatcagaagttcccctactagg |
43298186 |
T |
|
| Q |
449 |
cagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||| |||||||| || || |||||| |
|
|
| T |
43298185 |
cagaaaactgctttggtaagggccaata |
43298158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 476
Target Start/End: Complemental strand, 1524852 - 1524767
Alignment:
| Q |
391 |
tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||| || | ||||||||||||||||||||| ||||| | ||| ||||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
1524852 |
tcatgaagtggacaatttcctgcaaaacaatagaattatcagaagttcccctaccaggcagaaaactactttgataggggccaata |
1524767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 390 - 476
Target Start/End: Complemental strand, 23465224 - 23465137
Alignment:
| Q |
390 |
ttcatgaaatgaataatttcctgcaaaacaata-gagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||||||||| |||||||| ||||| || | ||||| || | ||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
23465224 |
ttcatgaaatgaacaatttcctccaaaaaaaaatgagttgtcagtagtgcccctaccaggcagaaaactgctctgatagggaccaata |
23465137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 5193219 - 5193271
Alignment:
| Q |
249 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggca |
301 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
5193219 |
caatgcatgataagcttgatggtgatgttcgtaaatccaaaatcaaggaggca |
5193271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 23465461 - 23465403
Alignment:
| Q |
162 |
ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcca |
220 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||| ||||||| ||||| || ||||| |
|
|
| T |
23465461 |
ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattcca |
23465403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 1525078 - 1524957
Alignment:
| Q |
165 |
tcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagct |
264 |
Q |
| |
|
|||||||| || || || || |||||||||||||| || || ||||| || |||||||| |||||| | |||||| | || |||||||||||||| | |
|
|
| T |
1525078 |
tcaccttgccgaagaccgtgggaaggcttgaaaggaggtaatttgttaccattccaaagaatagagaaggcaggagaggtaacacaatgcatgatgagtt |
1524979 |
T |
|
| Q |
265 |
tgatggtgatgttcggaaatcc |
286 |
Q |
| |
|
|||||||||| | ||| ||||| |
|
|
| T |
1524978 |
tgatggtgatatccgggaatcc |
1524957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Original strand, 14653570 - 14654027
Alignment:
| Q |
19 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
14653570 |
ggacatcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagc |
14653669 |
T |
|
| Q |
119 |
tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14653670 |
ggatagcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattc |
14653769 |
T |
|
| Q |
219 |
caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatccc |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
14653770 |
caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgttaggaaatccaaaatcatggaggcagttgtttaggaattccc |
14653869 |
T |
|
| Q |
319 |
agttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaac |
418 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14653870 |
agttgacgttgtcgaatgctttctccaaatcaagcttgaaagctacgtatcccttcttcctcttagatcgcttcatgaaatgaataatttcctgcaaaac |
14653969 |
T |
|
| Q |
419 |
aatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14653970 |
aatagagttatctgcagtgcccctaccaggcagaaaactgctttgatagggaccaata |
14654027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 126 - 476
Target Start/End: Original strand, 35135219 - 35135569
Alignment:
| Q |
126 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta |
225 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||||| |||||||||||| | | |||||| || ||||| | | |
|
|
| T |
35135219 |
ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaaa |
35135318 |
T |
|
| Q |
226 |
tagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgac |
325 |
Q |
| |
|
| ||||| || || || | || |||||||||||||| |||||||| |||| || || || ||||| |||||||| ||| ||||| ||||||||||| |
|
|
| T |
35135319 |
ttgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtctgggaagccgaaatcctggaggcaaatgcgaaggaagtcccagttgac |
35135418 |
T |
|
| Q |
326 |
gttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagag |
425 |
Q |
| |
|
|||||| ||||||||||| || ||||||||| ||||||| |||||||||||||||||||| ||||||| || || || ||||||||||||||||| ||| |
|
|
| T |
35135419 |
gttgtcaaaagctttctctaaatcaagcttgaaagctacaaaacccttcttccttttagagcgcttcataaagtggattatttcctgcaaaacaatggag |
35135518 |
T |
|
| Q |
426 |
ttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|| |||| || ||||||||||||| ||| |||||||| ||||||| |||| |
|
|
| T |
35135519 |
ttgtctgaggtacccctaccaggcaaaaaactgctttggtagggactaata |
35135569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 126 - 476
Target Start/End: Complemental strand, 40328325 - 40327975
Alignment:
| Q |
126 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta |
225 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||||| |||||||||||| | | |||||| || ||||| | | |
|
|
| T |
40328325 |
ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattccataaaa |
40328226 |
T |
|
| Q |
226 |
tagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgac |
325 |
Q |
| |
|
| ||||| || || || | || |||||||||||||| |||||||| |||| || || || ||||| |||||||| ||| ||||| ||||||||||| |
|
|
| T |
40328225 |
ttgagtagctcggtgaggtaacacaatgcatgatgagtttgatggtaatgtctgggaagccgaaatcctggaggcaaatgcgaaggaattcccagttgac |
40328126 |
T |
|
| Q |
326 |
gttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagag |
425 |
Q |
| |
|
|||||| ||||||||||| || ||||||||| ||||||| |||||||||||||||||||| ||||||| || || || ||||||||||||||||| ||| |
|
|
| T |
40328125 |
gttgtcaaaagctttctctaaatcaagcttgaaagctacaaaacccttcttccttttagagcgcttcataaagtggattatttcctgcaaaacaatggag |
40328026 |
T |
|
| Q |
426 |
ttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|| |||| || ||||||||||| | ||| || ||||| |||||||||||| |
|
|
| T |
40328025 |
ttgtctgaggtacccctaccaggaaaaaaactactttggtagggaccaata |
40327975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 138 - 476
Target Start/End: Complemental strand, 19265551 - 19265213
Alignment:
| Q |
138 |
aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactag |
237 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||| || || ||||||| |||||||||||| | | |||||| || ||||| | | ||||| || | |
|
|
| T |
19265551 |
aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataacaaggagtagcttg |
19265452 |
T |
|
| Q |
238 |
gagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagc |
337 |
Q |
| |
|
| || | || |||||||||||||| |||||||| ||||| || || || ||||| |||||||| ||| ||||| ||| ||||||||||||| ||||| |
|
|
| T |
19265451 |
gtgaggtaacacaatgcatgatgagtttgatggtaatgtttgggaagccgaaatcctggaggcaaatgcgaaggaagtccaagttgacgttgtcaaaagc |
19265352 |
T |
|
| Q |
338 |
tttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtg |
437 |
Q |
| |
|
|||||| || ||||||||| |||| || |||||||||||||||||||| ||||||| || || || ||||||||||||||||| ||||| ||| || |
|
|
| T |
19265351 |
tttctctaaatcaagcttgaaagccacaaaacccttcttccttttagagcgcttcataaagtggattatttcctgcaaaacaatggagttgtcttgggta |
19265252 |
T |
|
| Q |
438 |
cccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
19265251 |
cccctaccaggcaaaaaattgctttggtagggaccaata |
19265213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 123 - 463
Target Start/End: Complemental strand, 573342 - 573002
Alignment:
| Q |
123 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
222 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || ||||| ||| ||||| || ||||| | |
|
|
| T |
573342 |
agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaaggatgcattttgttaccattccata |
573243 |
T |
|
| Q |
223 |
gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagtt |
322 |
Q |
| |
|
|||||| | | || || | || |||||||||| || ||||||||||||| ||||||||||| ||||| |||||| | ||||||||||| | |
|
|
| T |
573242 |
aaatagagaacgttggtgatgtgacataatgcatgataagtttgatggtgatgtctggaaatccaaactcatgaaggcaggaattaaggaaatcccatct |
573143 |
T |
|
| Q |
323 |
gacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaata |
422 |
Q |
| |
|
||| || | |||||||| |||||||| |||||| |||| || || ||||||||| |||| || | |||||||||||| |||||||||||||||||| |
|
|
| T |
573142 |
gacattaccaaaagctttttccaagtcgagcttgaaagcaacataccccttcttcttttttgattttctcatgaaatgaacaatttcctgcaaaacaatt |
573043 |
T |
|
| Q |
423 |
gagttatctgcagtgcccctaccaggcagaaagctgctttg |
463 |
Q |
| |
|
|||||||| | ||| |||||||| ||||||| |||||||| |
|
|
| T |
573042 |
gagttatcagaagtttccctaccatgcagaaaactgctttg |
573002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 476
Target Start/End: Complemental strand, 16322611 - 16322246
Alignment:
| Q |
111 |
atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt |
210 |
Q |
| |
|
|||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| |||||||||| ||||||||||| |||| ||||| |
|
|
| T |
16322611 |
atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt |
16322512 |
T |
|
| Q |
211 |
tcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttag |
310 |
Q |
| |
|
| || ||||| || | ||| ||| | | || | || ||||||||||| || || | | || | |||||| || |||||| |||| || | | || |
|
|
| T |
16322511 |
ttccattccataggagagaataattggctgaggagacacaatgcatgataagtttaactataatatccggaaaaccgaaatcaaggagacaagagttgag |
16322412 |
T |
|
| Q |
311 |
gaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcc |
410 |
Q |
| |
|
||||||||| || || || || || ||||| |||| |||||||||| |||| ||||| ||||| |||||||| || | ||||| ||||| | ||||||| |
|
|
| T |
16322411 |
gaaatcccaattaacattatcaaacgctttttccaggtcaagcttgaaagccacgtagccctttttccttttggatcgtttcataaaatgtaaaatttcc |
16322312 |
T |
|
| Q |
411 |
tgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||| ||| ||||| || ||||| ||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
16322311 |
tgcaaaataattgagttgtcagcagtacccctaccaggtagaaagctactttgataggggccaata |
16322246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 123 - 476
Target Start/End: Complemental strand, 177649 - 177296
Alignment:
| Q |
123 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
222 |
Q |
| |
|
|||||||||||||| | |||||| || ||||| ||||| || |||||||||| || ||||||| |||||||| ||| ||| | ||||| || ||||||| |
|
|
| T |
177649 |
agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa |
177550 |
T |
|
| Q |
223 |
gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagtt |
322 |
Q |
| |
|
| | |||| | | | ||||| || |||||||||||||| ||||| || | ||| || |||||||| ||||| || || || || ||||| || |
|
|
| T |
177549 |
gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgattgtatcatccgggaaaccaaaatcttggagacacgatctaagaaactcccaatt |
177450 |
T |
|
| Q |
323 |
gacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaata |
422 |
Q |
| |
|
|| ||||| ||||||||||| | ||||| ||| |||| |||||||| || |||||||| || | ||| ||||||| ||||||||||||||||||| |
|
|
| T |
177449 |
cacattgtcaaaagctttctcaagatcaagtttgaaagcaacgtaaccttttttcctttttgatctccgcataaaatgaacaatttcctgcaaaacaata |
177350 |
T |
|
| Q |
423 |
gagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||| || | |||||||||||| |||| || |||||||| |||||||||||| |
|
|
| T |
177349 |
gagttgtcagaagtgcccctaccttgcaggaaactgctttggtagggaccaata |
177296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 123 - 293
Target Start/End: Complemental strand, 26791471 - 26791301
Alignment:
| Q |
123 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
222 |
Q |
| |
|
||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||||| ||||| |||||| |||||| | || || ||||||| |
|
|
| T |
26791471 |
agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa |
26791372 |
T |
|
| Q |
223 |
gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatca |
293 |
Q |
| |
|
| |||||| | || | |||| ||||||||||||||||||||||||||| | | ||| || ||||||||| |
|
|
| T |
26791371 |
gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtggtatccgggaagccaaaatca |
26791301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 309 - 476
Target Start/End: Original strand, 42403400 - 42403567
Alignment:
| Q |
309 |
aggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataattt |
408 |
Q |
| |
|
||||| ||||||||||| || || || ||||| |||| |||||||||| | || || |||||||| |||||||| || ||||| ||||| ||||||| |
|
|
| T |
42403400 |
aggaattcccagttgacattatcaaacgctttttccaggtcaagcttgaaggccacataaccctttttccttttggatcttttcataaaatgtataattt |
42403499 |
T |
|
| Q |
409 |
cctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||||||||| || ||||| | ||| ||||||||||| ||||| || ||||| |||| |||||| |
|
|
| T |
42403500 |
cctgcaaaacaattgaattatcagaagtacccctaccaggtagaaaactactttggcaggggccaata |
42403567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 3779048 - 3779121
Alignment:
| Q |
126 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg |
199 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||||| |||||||||||| |
|
|
| T |
3779048 |
ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg |
3779121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
| Q |
118 |
ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca |
204 |
Q |
| |
|
||||||||||||||||||| || || || |||||||| || | || |||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
42403209 |
ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca |
42403295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
| Q |
123 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc |
174 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
35062956 |
agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc |
35063007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 475
Target Start/End: Complemental strand, 39012398 - 39012328
Alignment:
| Q |
405 |
atttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaat |
475 |
Q |
| |
|
||||||||||||||||| || || || | |||||||||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
39012398 |
atttcctgcaaaacaatcgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaat |
39012328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 123 - 476
Target Start/End: Complemental strand, 7817285 - 7816932
Alignment:
| Q |
123 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
222 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||||| ||||||||||| || | |||||||| ||||| | |
|
|
| T |
7817285 |
agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata |
7817186 |
T |
|
| Q |
223 |
gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagtt |
322 |
Q |
| |
|
|||||||| | | || | ||| |||||||||||||||||||| ||||||| || || ||||||||||||||||| || ||||||||||| || |
|
|
| T |
7817185 |
aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtgatgtcagggaaaccaaaatcatggaggcacgaactaaggaaatcccaatt |
7817086 |
T |
|
| Q |
323 |
gacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaata |
422 |
Q |
| |
|
|||||||||||||||||| |||| |||||| ||| | ||||| | ||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
7817085 |
gacgttgtcgaaagctttttccaggtcaagtttgaatgctacaaaccccttcttccttttagaccgcttcatgaaatgcaaaatttcctgcaaaacaata |
7816986 |
T |
|
| Q |
423 |
gagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||||| || || |||||| |
|
|
| T |
7816985 |
gagttatctgaagtacccctaccaggcagaaaactgctttggtaagggccaata |
7816932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 118 - 476
Target Start/End: Original strand, 6641008 - 6641366
Alignment:
| Q |
118 |
ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgtt |
217 |
Q |
| |
|
||||||| ||||||||||| | ||||| || || || || | ||||||||||| |||||||||||||| ||||||||||| | || ||||| ||||| |
|
|
| T |
6641008 |
ctgaaagtttttccatgcacataatgaagaggtagggagagagcggatcaccttttcggaggccatgagtgggcttgaaaggggacattttgtttccgtt |
6641107 |
T |
|
| Q |
218 |
ccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcc |
317 |
Q |
| |
|
||| | | ||||||| | | || | || |||| |||||| |||||||| ||||| | |||||| ||||| |||||||| || | | ||||| | | |
|
|
| T |
6641108 |
ccataagagagagtaagtggctgaggagacacaatacatgataagcttgattgtgatatccggaaaaccaaagtcatggagacaagagttgaggaacttc |
6641207 |
T |
|
| Q |
318 |
cagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaa |
417 |
Q |
| |
|
|| || || || || |||||||| |||| |||||||||| ||||||| || ||||| || ||||| || ||||| ||||| | |||||||||||||| |
|
|
| T |
6641208 |
caattaacattatcaaaagctttttccaggtcaagcttgaaagctacatagcccttttttcttttggatcttttcataaaatggacaatttcctgcaaaa |
6641307 |
T |
|
| Q |
418 |
caatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||| |||||||| ||||||||||| ||| ||||| || ||||||||||| |||||| |
|
|
| T |
6641308 |
taattgagttatcataagtgcccctacgaggtagaaaactactttgataggggccaata |
6641366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
| Q |
123 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
222 |
Q |
| |
|
|||||||||||||||| |||||| | ||| || || | ||| || ||||| |||||||||||||||||||||||||| |||||||||||||| || |||| |
|
|
| T |
32874457 |
agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa |
32874556 |
T |
|
| Q |
223 |
gtataga |
229 |
Q |
| |
|
| ||||| |
|
|
| T |
32874557 |
ggataga |
32874563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 23944900 - 23944828
Alignment:
| Q |
391 |
tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttg |
463 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
23944900 |
tcatgtaatgaataatttcctgcaaaacaatggaattatcagaagttcccctaccaggcagaaagctgctttg |
23944828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 476
Target Start/End: Original strand, 23620887 - 23620971
Alignment:
| Q |
392 |
catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| || |||||| ||||| ||||||| | |||||| |||||||||||| |
|
|
| T |
23620887 |
catgaaatggacaatttcctgcaaaacaatagagttgtcaaaagtgcctctaccttgcagaaaaccgctttggtagggaccaata |
23620971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 8e-59; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 126 - 476
Target Start/End: Original strand, 54477407 - 54477758
Alignment:
| Q |
126 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta |
225 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | ||||||||||| || | |||||| || |||||||| | |
|
|
| T |
54477407 |
ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga |
54477506 |
T |
|
| Q |
226 |
tagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgac |
325 |
Q |
| |
|
|| |||| | | || | || |||||||||||||||||||||||||||| || || | |||||||| ||||||||||| ||||| ||||| ||||| |
|
|
| T |
54477507 |
taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtcagggaactcgaaatcatgaaggcagttgctaaggaattcccaattgac |
54477606 |
T |
|
| Q |
326 |
gttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgc-aaaacaataga |
424 |
Q |
| |
|
||||| |||||||| | ||| |||||||| ||||||| ||||||||||| ||||| || | | ||||||||||| ||||||||| ||||||||||| |
|
|
| T |
54477607 |
attgtcaaaagcttttttcaaatcaagcttaaaagctacataacccttcttacttttggatctccttatgaaatgaattatttcctgcaaaaacaataga |
54477706 |
T |
|
| Q |
425 |
gttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| |||||||| |||| |||||| |
|
|
| T |
54477707 |
gttatctgaagtgccccttccaggcagaaaactgctttggcaggggccaata |
54477758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 123 - 476
Target Start/End: Complemental strand, 3881868 - 3881512
Alignment:
| Q |
123 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
222 |
Q |
| |
|
||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| |||||| ||||| || ||||| | |
|
|
| T |
3881868 |
agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccata |
3881769 |
T |
|
| Q |
223 |
gtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagt |
321 |
Q |
| |
|
|||||| | | |||| || | || ||||||||||| || |||||||||||| |||||| |||| ||||| ||||| | || |||||||| | |
|
|
| T |
3881768 |
agatagagaaggt-ggaggaggtgacacaatgcatgataagtttgatggtgatggccggaaaatcaaactcatgaaggcaagaattaagaaaatcccatt |
3881670 |
T |
|
| Q |
322 |
tgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacc---cttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaac |
418 |
Q |
| |
|
|||| || || || ||||| ||||| || |||||| |||| || ||||| ||||||| | ||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
3881669 |
tgacattatcaaatgctttttccaaatcgagcttgaaagcaacataacctttcttcttcttcttagacttcttcataaaatgaataatttcctgcaaaac |
3881570 |
T |
|
| Q |
419 |
aatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||||||| |||||||| || || |||||| |
|
|
| T |
3881569 |
aatagagttatcagaagttcccctaccaggcagaaaactgctttggtaagggccaata |
3881512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 33803860 - 33803788
Alignment:
| Q |
391 |
tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttg |
463 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
33803860 |
tcatgtaatgaataatttcctgcaaaacaatggaattatcagaagttcccctaccaggcagaaagctgctttg |
33803788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 476
Target Start/End: Complemental strand, 48848055 - 48847971
Alignment:
| Q |
392 |
catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||| ||| | ||||||||||||||||| | ||| || | |||||||||||||| |||||| |||||||||||| |||||||| |
|
|
| T |
48848055 |
catgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcccctaccagacagaaaactgctttgatagagaccaata |
48847971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 476
Target Start/End: Original strand, 46784469 - 46784826
Alignment:
| Q |
120 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc |
219 |
Q |
| |
|
||||| |||| ||||||||||||||| || || || || | ||||||||||||| |||||||||| ||| |||||||||||||| || || || |||| |
|
|
| T |
46784469 |
gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc |
46784568 |
T |
|
| Q |
220 |
aaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatccca |
319 |
Q |
| |
|
|||| | ||| || | | || | || |||||||||||||||||||||||| | | ||||| ||||||||||| || || | ||||| ||||| |
|
|
| T |
46784569 |
aaaggacggagaaagttgatgacgtaacacaatgcatgatgagcttgatggtggcgctaggaaacccaaaatcatgaagacaagaattaaggaactccca |
46784668 |
T |
|
| Q |
320 |
gttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttc-cttttagagtgcttcatgaaatgaataatttcctgcaaaac |
418 |
Q |
| |
|
|| || || ||||||||||| || | |||||| ||| |||| ||| | || || || | || || | |||||| |||| ||||||||||||||| |
|
|
| T |
46784669 |
atttacattatcgaaagctttttcaaggtcaagtttgaaagcgacgaagccttttttttcgcttggatctccacatgaagtgaacaatttcctgcaaaac |
46784768 |
T |
|
| Q |
419 |
aatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||||| || | |||||| |||| || ||||| || ||||| |||||||||||| |
|
|
| T |
46784769 |
aatagagttgtcagaggtgcccttacctggtagaaaactactttggtagggaccaata |
46784826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 123 - 476
Target Start/End: Complemental strand, 76057 - 75707
Alignment:
| Q |
123 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||| ||||||||| | |||| |||||||| ||||| | |
|
|
| T |
76057 |
agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagcttgttcca-ttccata |
75959 |
T |
|
| Q |
223 |
gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagtt |
322 |
Q |
| |
|
|| ||||| |||| |||| | ||||||| ||||||||||| ||||||| | || || ||||||||||||||| |||| || |||||| |||| |
|
|
| T |
75958 |
aaattgagtagctagatgaagaaatacaatgcaaaatgagcttgatagtgatgtctaggaagccgaaatcatggaggcagatgctaagaaaatccaagtt |
75859 |
T |
|
| Q |
323 |
gacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaata |
422 |
Q |
| |
|
||||||||| |||| |||| || ||||| ||| ||||||| | ||||||||||||| || |||||||||| ||||| |||||||||||||||||| |
|
|
| T |
75858 |
gacgttgtcaaaagatttc--catatcaagtttgaaagctacaaagtccttcttccttttggaacgcttcatgaagtgaattatttcctgcaaaacaata |
75761 |
T |
|
| Q |
423 |
gagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||||||| ||||||||||||||||| | | || ||||||||||| |||||| |
|
|
| T |
75760 |
aagttatctgaagtgcccctaccaggcaaacaactactttgataggggccaata |
75707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 120 - 463
Target Start/End: Original strand, 24893833 - 24894176
Alignment:
| Q |
120 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc |
219 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| | ||||||||||| |||| ||||| || |||| |
|
|
| T |
24893833 |
gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc |
24893932 |
T |
|
| Q |
220 |
aaagtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatccc |
318 |
Q |
| |
|
| | ||| ||| | | |||| || | || |||||||||||||||||||||||||||| ||||| ||||| || || ||||| | |||||||||| |
|
|
| T |
24893933 |
ataatatggagaatgt-ggaggaggtgacacaatgcatgatgagcttgatggtgatgtctggaaaaccaaattcctgaaggcaagaattaaggaaatccc |
24894031 |
T |
|
| Q |
319 |
agttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaac |
418 |
Q |
| |
|
| |||| || |||||||||||||||||||| |||||| |||| || ||||| |||||||| || || | | ||||||| |||||||||||||||||||| |
|
|
| T |
24894032 |
atctgacattatcgaaagctttctccaagtctagcttgaaagcaacataacctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaac |
24894131 |
T |
|
| Q |
419 |
aatagagttatctgcagtgcccctaccaggcagaaagctgctttg |
463 |
Q |
| |
|
||| |||||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
24894132 |
aattgagttatcagaagttcccctaccaggcagaaagctgctttg |
24894176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 249 - 476
Target Start/End: Original strand, 11296925 - 11297152
Alignment:
| Q |
249 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
348 |
Q |
| |
|
||||||||||||||| | |||||||||| || || ||||||||||||||| | || || |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
11296925 |
caatgcatgatgagcataatggtgatgtcggggaaaccaaaatcatggaggaaagaactaagaaaatcccaattgacgttgtcaaaagctttctccaagt |
11297024 |
T |
|
| Q |
349 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
448 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||||| ||||||| || || ||||| ||||||||||| |||||||| | ||| || |||||||| |
|
|
| T |
11297025 |
caagcttgaaagcgacataacccttcttccttttagatcttatcatgaagtggatgatttcgtgcaaaacaattgagttatcagaagtaccactaccagg |
11297124 |
T |
|
| Q |
449 |
cagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |
|
|
| T |
11297125 |
cagaaaactgctttgataggaaccaata |
11297152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 163 - 476
Target Start/End: Complemental strand, 35233599 - 35233286
Alignment:
| Q |
163 |
gatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgag |
262 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||| ||||||||||| || ||||| | ||||| || ||| ||| || || ||||| || | |
|
|
| T |
35233599 |
gatcaccttgtcggagaccatgtgtaggcttgaaattaggcaacttgtttccattccataaaatagaaaaagtagataaagaaacacagtgcataataaa |
35233500 |
T |
|
| Q |
263 |
cttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagct |
362 |
Q |
| |
|
||||||||||||||| || || || || ||||| ||||| || || || || ||||||||||| ||||| ||||||||||| | ||||| ||| ||||| |
|
|
| T |
35233499 |
cttgatggtgatgttagggaaaccgaagtcatgaaggcaattactaagaaactcccagttgacattgtcaaaagctttctctagatcaagtttgaaagct |
35233400 |
T |
|
| Q |
363 |
acgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgcttt |
462 |
Q |
| |
|
|| || || |||||| |||| || | ||||||| |||| |||||||| ||||||||| ||||| || | ||||||||||||| |||||| ||||||| |
|
|
| T |
35233399 |
acataccctttcttctttttggattttctcatgaagtgaacaatttccttcaaaacaattgagttgtcagaggtgcccctaccagacagaaaactgcttt |
35233300 |
T |
|
| Q |
463 |
gatagggaccaata |
476 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
35233299 |
gataggggccaata |
35233286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 476
Target Start/End: Original strand, 32725587 - 32725814
Alignment:
| Q |
249 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt |
348 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| ||| ||||||| | || |||||||| |||| || || ||||||||||||| || |
|
|
| T |
32725587 |
caatgcatgataagcttgatggtgatgtccggaaatccaaactcaaggaggcaagaattaagaaaatcccatctgacattatcaaaagctttctccaggt |
32725686 |
T |
|
| Q |
349 |
caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg |
448 |
Q |
| |
|
|||| ||| ||||||| || ||||||||| ||||||| |||| || |||| ||||||| ||||||||| ||||| || ||| |||||| ||| |
|
|
| T |
32725687 |
caagtttgaaagctacatatcccttcttctttttagatcttctcataaagtgaactatttcctacaaaacaattgagttgtcataagttcccctattagg |
32725786 |
T |
|
| Q |
449 |
cagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||| |||||||| || || |||||| |
|
|
| T |
32725787 |
cagaaaactgctttggtaagggccaata |
32725814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 292
Target Start/End: Original strand, 24990660 - 24990832
Alignment:
| Q |
120 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc |
219 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| | ||||||||||| |||| ||||| ||||||| |
|
|
| T |
24990660 |
gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttcc |
24990759 |
T |
|
| Q |
220 |
aaagtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatc |
292 |
Q |
| |
|
| | ||||| || | |||| || | || || ||||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
24990760 |
ataaaatagaaaaagt-ggaggaggtgacacagtgcatgatgagtttgatggtgatgtctggaaaaccaaaatc |
24990832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 27852952 - 27853059
Alignment:
| Q |
123 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
222 |
Q |
| |
|
||||||||||| ||||||||||| | ||||| || || || || ||||||| || ||||||||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
27852952 |
agcttttccatacaaaggatgaataagtaaggagataaagggtccccttgtcttagaccatgagaaggcttgaaagaaggcattttgtttccgttccaaa |
27853051 |
T |
|
| Q |
223 |
gtatagag |
230 |
Q |
| |
|
| |||||| |
|
|
| T |
27853052 |
gaatagag |
27853059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 13599745 - 13599639
Alignment:
| Q |
114 |
gcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcc |
213 |
Q |
| |
|
||||||||||| |||||||| || | |||||| |||||||| || | ||||||||||| ||||| |||||| ||||||||| |||| |||||||| | |
|
|
| T |
13599745 |
gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaacttgttac |
13599646 |
T |
|
| Q |
214 |
cgttcca |
220 |
Q |
| |
|
| ||||| |
|
|
| T |
13599645 |
cattcca |
13599639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 246 - 463
Target Start/End: Original strand, 23207989 - 23208206
Alignment:
| Q |
246 |
acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctcca |
345 |
Q |
| |
|
||||||||||||||||| |||||||| || | ||||| |||||||| |||||||| | ||||||||||| |||| || |||||||||||||||| |
|
|
| T |
23207989 |
acgcaatgcatgatgagtttgatggtaatatctggaaaaccaaaatcctggaggcaagaattaaggaaatcccatctgacattatcgaaagctttctcca |
23208088 |
T |
|
| Q |
346 |
agtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc |
445 |
Q |
| |
|
|||| |||||| |||| || ||||| |||||||| || || | | |||| || ||||||||||||||||||||||| ||||| || | ||| |||||||| |
|
|
| T |
23208089 |
agtctagcttgaaagcaacataacctttcttcctctttgacttcctcataaagtgaataatttcctgcaaaacaattgagttgtcagaagttcccctacc |
23208188 |
T |
|
| Q |
446 |
aggcagaaagctgctttg |
463 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
23208189 |
tggcagaaaactgctttg |
23208206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 121 - 472
Target Start/End: Original strand, 27781628 - 27781979
Alignment:
| Q |
121 |
aaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcca |
220 |
Q |
| |
|
||||||| |||||||| |||||||| || ||||| || | || |||||||||| ||||||||||| ||||| || || |||| |||||||||||||| |
|
|
| T |
27781628 |
aaagcttctccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtctgaggccatgagttggcttaaatggaggcattttgttcccgttcca |
27781727 |
T |
|
| Q |
221 |
aagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccag |
320 |
Q |
| |
|
|| || ||| || | | || | || || |||||||||||||| ||||| || | || || ||||| ||||| ||||| |||| ||||||||| |
|
|
| T |
27781728 |
tagaatggagaaagtggatgaggtgacacagtgcatgatgagctttatggtaatatctgggaaaccaaagtcatgaaggcaagcacttaagaaatcccaa |
27781827 |
T |
|
| Q |
321 |
ttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaa |
420 |
Q |
| |
|
||||| || || ||||||||||| | |||||| ||| ||||||| |||| |||||| | ||||| | ||| || || | |||||||| |||||||| |
|
|
| T |
27781828 |
ttgacattatcaaaagctttctctaggtcaagtttgaaagctacacaacctttcttcttcttagatctccgcataaagtgtacaatttcctacaaaacaa |
27781927 |
T |
|
| Q |
421 |
tagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggacc |
472 |
Q |
| |
|
||||||| || || ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
27781928 |
tagagttgtcagccgtgcccctacctggcaggaagctgctttgatagggacc |
27781979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 117 - 476
Target Start/End: Original strand, 16769956 - 16770314
Alignment:
| Q |
117 |
gctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgt |
216 |
Q |
| |
|
||||| || |||||||| || | |||||| |||||||| || | |||||||||||||| || ||||||| ||| |||||| ||||||| ||||| || | |
|
|
| T |
16769956 |
gctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccat |
16770055 |
T |
|
| Q |
217 |
tccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatc |
316 |
Q |
| |
|
|||| | |||||| || | | ||||| || || ||||| || || |||||||| |||| || |||||||||||||| || || || || ||||| |
|
|
| T |
16770056 |
tccataaaatagagaaagtggaagaagaaacacagtgcataataagtttgatggtaatgtctgggaatccaaaatcatgcagacaattatgaagaaaatc |
16770155 |
T |
|
| Q |
317 |
ccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaa |
416 |
Q |
| |
|
|||||||| || || |||||||| || | ||||||||| |||| || ||||| ||||| |||| | ||| |||||||| ||||||||||||| |
|
|
| T |
16770156 |
tcagttgacattatcaaaagctttttcaaggtcaagcttaaaagccacataacc-ttcttttttttttatcttctcaagaaatgaaaaatttcctgcaaa |
16770254 |
T |
|
| Q |
417 |
acaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
||||| ||||| || | ||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
16770255 |
acaattgagttgtcagtagtgcccctaccaggcagaaaactgctctgataaggaccaata |
16770314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 476
Target Start/End: Original strand, 1579428 - 1579512
Alignment:
| Q |
392 |
catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|||||| ||| | ||||||| ||||||||| ||||| || | || |||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
1579428 |
catgaagtgagttatttccttcaaaacaattgagttgtcagtagcgcccctactaggcagaaaactgctttgatagggaccaata |
1579512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 1353794 - 1353864
Alignment:
| Q |
126 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaa |
196 |
Q |
| |
|
|||||||| ||||| ||||||||||| || || | |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
1353794 |
ttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaa |
1353864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 268
Target Start/End: Original strand, 1579159 - 1579304
Alignment:
| Q |
123 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
222 |
Q |
| |
|
||||||||||||||||| || || || |||||||| | ||||||||| |||| ||| ||||||| ||| | || || ||||||||||| | ||| | | |
|
|
| T |
1579159 |
agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga |
1579258 |
T |
|
| Q |
223 |
gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat |
268 |
Q |
| |
|
| |||||| || | | ||||| || |||||||||||||| ||||| |
|
|
| T |
1579259 |
gaatagagaaagttgaagaagaaacacaatgcatgatgagattgat |
1579304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 476
Target Start/End: Complemental strand, 9120 - 8764
Alignment:
| Q |
120 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc |
219 |
Q |
| |
|
||||| || ||||||||||| || ||||| || ||||| | |||||||| || ||||||||||||||||| |||||| |||| | | || || |||| |
|
|
| T |
9120 |
gaaagtttctccatgcaaagtataaaaaggtacggggaaagtggatcaccctgcgtgaggccatgagaaggctcgaaaggaggcagcctattaccattcc |
9021 |
T |
|
| Q |
220 |
aaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatccca |
319 |
Q |
| |
|
|||| |||||| | || | || | ||||||||||||||||||||||||||| | | ||| || ||||||||| ||||| | || |||||||| |
|
|
| T |
9020 |
aaagaatagagaatctggatgaggtaacgcaatgcatgatgagcttgatggtggtatccgggaagccaaaatcacaaaggcaagatcggagaaaatccca |
8921 |
T |
|
| Q |
320 |
gttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaaca |
419 |
Q |
| |
|
||| || || || ||||||||||| || || | ||| |||| ||||| || |||||| | || || |||| | ||||||||||||||||||||| |
|
|
| T |
8920 |
gttaacattatcaaaagctttctctaaatcgatcttaaaagccacgtatcctttcttcttcttggatcttcgcatgtagtgaataatttcctgcaaaaca |
8821 |
T |
|
| Q |
420 |
atagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata |
476 |
Q |
| |
|
|| | || || | ||||||||||||||||| || |||||||| || ||||||||| |
|
|
| T |
8820 |
atggcattgtcagtggtgcccctaccaggcaggaaactgctttggtaaggaccaata |
8764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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