View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9628_high_4 (Length: 470)
Name: NF9628_high_4
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9628_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 18220955 - 18220719
Alignment:
| Q |
20 |
gtgtaagtagtagcagcgtggccaaaaagtctaagaaaaatcaccaaggtgtgagtagtggcagtggggataaaaagtctgagaaagcagtgaatgacac |
119 |
Q |
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| T |
18220955 |
gtgtaagtagtagcagcgtggccaaaaagtctaagaaaaatcaccaaggtgtgagtagtggcagtggggataaaaagtctgagaaagcagtgaatgacac |
18220856 |
T |
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| Q |
120 |
caagaatcaggaacttgtggtttatagaagaaacaagccaaaaatatggattgatagatgggctgctgataggtaaatggttatttgtattcaaagatgt |
219 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
18220855 |
caagaagcaggaacttgtggtttatagaagaaacaagccaaaaatatggattgatagatgggctgctgagaggtaaatggttatttgtatttaaagatgt |
18220756 |
T |
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| Q |
220 |
aaccnnnnnnncagtacacagttcagttttccacttg |
256 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
18220755 |
aacctttttttcagtacacagttcagttttccacttg |
18220719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 321 - 457
Target Start/End: Complemental strand, 18220654 - 18220518
Alignment:
| Q |
321 |
cttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagctg |
420 |
Q |
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| T |
18220654 |
cttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagctg |
18220555 |
T |
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| Q |
421 |
agatcagaagcacgaaagtatattggtgacacaggtt |
457 |
Q |
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| T |
18220554 |
agatcagaagcacgaaagtatattggtgacacaggtt |
18220518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 9e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 320 - 457
Target Start/End: Complemental strand, 43012431 - 43012294
Alignment:
| Q |
320 |
ccttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagct |
419 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43012431 |
ccttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagct |
43012332 |
T |
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| Q |
420 |
gagatcagaagcacgaaagtatattggtgacacaggtt |
457 |
Q |
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| T |
43012331 |
tagatcagaagcaagaaagtatattggtgacacaggtt |
43012294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 55 - 256
Target Start/End: Complemental strand, 43012695 - 43012495
Alignment:
| Q |
55 |
aaaaatcaccaaggtgtgagtagtggcagtggggataaaaagtctgagaaagcagtgaatgacaccaagaatcaggaacttgtggtttatagaagaaaca |
154 |
Q |
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|||||||| ||||||||||||||| |||| || | ||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |
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| T |
43012695 |
aaaaatcaacaaggtgtgagtagtagcagcggagccaaaaaatctaagaaagcagtgaatgacaccaagaagcaggaactcgtggtttatagcagaaaca |
43012596 |
T |
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| Q |
155 |
agccaaaaatatggattgatagatgggctgctgataggtaaatggttatttgtattcaaagatgtaaccnnnnnnncagtacacagttcagttttccact |
254 |
Q |
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|||||||| || ||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| |
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| T |
43012595 |
agccaaaactagggatttatagatgggctgctgagaggtaaatggttatttgtattcatagatgtaacc-ttttttcaatacacagttcagttttccact |
43012497 |
T |
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| Q |
255 |
tg |
256 |
Q |
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|| |
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|
| T |
43012496 |
tg |
43012495 |
T |
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