View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9628_low_1 (Length: 976)
Name: NF9628_low_1
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9628_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 814; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 814; E-Value: 0
Query Start/End: Original strand, 17 - 961
Target Start/End: Original strand, 27999325 - 28000270
Alignment:
| Q |
17 |
catcaaggaggaggccagggagctgagttttttcccagtctctccagcaatgttcttaagggaagatatatcttgttgtgcctgtaaaacaatcagggtt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27999325 |
catcaaggaggaggccagggagctgagttttttcccagtctctccagcaatgttcttaagggaagatatatcttgttgtgcctgtaaaacaatcagggtt |
27999424 |
T |
|
| Q |
117 |
gggaggaaaaggggcaaagcatcccatcagacatcaatccaagaactaaagccgaataattttaatgaaattatggacaacattaaccatgaagtatctg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27999425 |
gggaggaaaaggggcaaagcatcccatcagacatcaatccaagaactaaagccgaataattttaatgaaattatggacaacattaaccatgaagtatcta |
27999524 |
T |
|
| Q |
217 |
taacaataacgaaaggaatacctgaaaagataatcgattaatgagatcgctagcagcaagatcaatggaggaatctgcagagtcaccnnnnnnntccgca |
316 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
27999525 |
tcacaataacgaaagaaatacctgaaaagataatcgattaatgagatcgctagcagcaagatcaatggaggaatctgcagagtcaccaaaaaaatccgca |
27999624 |
T |
|
| Q |
317 |
ctggagatggcagatgaactctgaagtaacaagagtgactagaattaa--ttgagagtacaaagtgattcatataagattcttcaataagaaataaactt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27999625 |
ctggagatggcagatgaactctgaagtaacaggagtgactagaattaattttgacagtacaaagtgattcatataagattcttcaataagaaataaactt |
27999724 |
T |
|
| Q |
415 |
tggaaagcaagttagctctttggcacctaattttcataccagttaattattttccttaaagaaatttggtgccagatacactacttgtccttgataatgt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
27999725 |
tggaaagcaagttagctctttggcacctaattttcatatcagttaattgttttccttaaagaaatttggtgccagattcactacttgtccttgataatgt |
27999824 |
T |
|
| Q |
515 |
aaaagtacccctctagtcgttaaagagccacaaatgccaattacagtagtccgttttcaataattattgtattcagtgcttgaaaactaatatgacaaat |
614 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27999825 |
aaaattacccctctagtcgttaaagagccacaaatgccaattacagtagtccgttttcaat-attattgtattcagtgcatgaaaactaatatgacaaat |
27999923 |
T |
|
| Q |
615 |
attctgggttctagagactaggaaagggtttttacaatcggaactaacgtgtccatgacaaaatttcttagagatggatataggggtttgtttattaata |
714 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
27999924 |
attctaggttctagagactaggaaagggtttttacattcggaactaacgcgtccatgacaaaatttcttagagatggatttaggggtttgtttattaata |
28000023 |
T |
|
| Q |
715 |
atataagttagtgcaatnnnnnnntacgattggaaagaaacaatctaatataatcccataacaggggattgataatcacaaatgtgtagtttcacactgt |
814 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28000024 |
atataagttagagcaataaaaaaatacgattggaaagaaacaatctaatatagtcccataacaggggattgataatcacaaatgtgtagtttcacactgt |
28000123 |
T |
|
| Q |
815 |
atgttgcagtaagttactataagaaaggacacttactgaaaactttgacaaagtagctcgagcctcagcatctcttgctttgttctggtctccaaaaaat |
914 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
28000124 |
atgttgcagtaagttactataagaaaggacacatactgaaaactttgacaaagtagctcgagtctcagcatctcttgctttgttctggtctccaaaaaat |
28000223 |
T |
|
| Q |
915 |
tgagatgacgaaatagatttagcatttgagaacttctttcttgcttc |
961 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28000224 |
tgagatgacgaaatagatttagcatttgagaacttctttcttgcttc |
28000270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 814; E-Value: 0
Query Start/End: Original strand, 17 - 961
Target Start/End: Original strand, 28056627 - 28057572
Alignment:
| Q |
17 |
catcaaggaggaggccagggagctgagttttttcccagtctctccagcaatgttcttaagggaagatatatcttgttgtgcctgtaaaacaatcagggtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28056627 |
catcaaggaggaggccagggagctgagttttttcccagtctctccagcaatgttcttaagggaagatatatcttgttgtgcctgtaaaacaatcagggtt |
28056726 |
T |
|
| Q |
117 |
gggaggaaaaggggcaaagcatcccatcagacatcaatccaagaactaaagccgaataattttaatgaaattatggacaacattaaccatgaagtatctg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28056727 |
gggaggaaaaggggcaaagcatcccatcagacatcaatccaagaactaaagccgaataattttaatgaaattatggacaacattaaccatgaagtatcta |
28056826 |
T |
|
| Q |
217 |
taacaataacgaaaggaatacctgaaaagataatcgattaatgagatcgctagcagcaagatcaatggaggaatctgcagagtcaccnnnnnnntccgca |
316 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
28056827 |
tcacaataacgaaagaaatacctgaaaagataatcgattaatgagatcgctagcagcaagatcaatggaggaatctgcagagtcaccaaaaaaatccgca |
28056926 |
T |
|
| Q |
317 |
ctggagatggcagatgaactctgaagtaacaagagtgactagaattaa--ttgagagtacaaagtgattcatataagattcttcaataagaaataaactt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28056927 |
ctggagatggcagatgaactctgaagtaacaggagtgactagaattaattttgacagtacaaagtgattcatataagattcttcaataagaaataaactt |
28057026 |
T |
|
| Q |
415 |
tggaaagcaagttagctctttggcacctaattttcataccagttaattattttccttaaagaaatttggtgccagatacactacttgtccttgataatgt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28057027 |
tggaaagcaagttagctctttggcacctaattttcatatcagttaattgttttccttaaagaaatttggtgccagattcactacttgtccttgataatgt |
28057126 |
T |
|
| Q |
515 |
aaaagtacccctctagtcgttaaagagccacaaatgccaattacagtagtccgttttcaataattattgtattcagtgcttgaaaactaatatgacaaat |
614 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28057127 |
aaaattacccctctagtcgttaaagagccacaaatgccaattacagtagtccgttttcaat-attattgtattcagtgcatgaaaactaatatgacaaat |
28057225 |
T |
|
| Q |
615 |
attctgggttctagagactaggaaagggtttttacaatcggaactaacgtgtccatgacaaaatttcttagagatggatataggggtttgtttattaata |
714 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28057226 |
attctaggttctagagactaggaaagggtttttacattcggaactaacgcgtccatgacaaaatttcttagagatggatttaggggtttgtttattaata |
28057325 |
T |
|
| Q |
715 |
atataagttagtgcaatnnnnnnntacgattggaaagaaacaatctaatataatcccataacaggggattgataatcacaaatgtgtagtttcacactgt |
814 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28057326 |
atataagttagagcaataaaaaaatacgattggaaagaaacaatctaatatagtcccataacaggggattgataatcacaaatgtgtagtttcacactgt |
28057425 |
T |
|
| Q |
815 |
atgttgcagtaagttactataagaaaggacacttactgaaaactttgacaaagtagctcgagcctcagcatctcttgctttgttctggtctccaaaaaat |
914 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28057426 |
atgttgcagtaagttactataagaaaggacacatactgaaaactttgacaaagtagctcgagtctcagcatctcttgctttgttctggtctccaaaaaat |
28057525 |
T |
|
| Q |
915 |
tgagatgacgaaatagatttagcatttgagaacttctttcttgcttc |
961 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28057526 |
tgagatgacgaaatagatttagcatttgagaacttctttcttgcttc |
28057572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 27991356 - 27991444
Alignment:
| Q |
17 |
catcaaggaggaggccagggagctgagttttttcccagtctctccagcaatgttcttaagggaagatatatcttgttgtgcctgtaaaa |
105 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
27991356 |
catcaaggaggatgccaaggaggtgagttttttcccagtctctccagcaatgttcttaagggaagagatatcctgttgtgcctgtaaaa |
27991444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 823 - 961
Target Start/End: Original strand, 27992573 - 27992708
Alignment:
| Q |
823 |
gtaagttactataagaaaggacacttactgaaaactttgacaaagtagctcgagcctcagcatctcttgctttgttctggtctccaaaaaattgagatga |
922 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||| ||||| ||| |||| || |||| | || ||||||||||||||||||||||| ||||| |
|
|
| T |
27992573 |
gtaagttactgaaagaaaggacacatactgaaaactttgataaagttgcttgagcatccgcat---tagccttgttctggtctccaaaaaattgggatga |
27992669 |
T |
|
| Q |
923 |
cgaaatagatttagcatttgagaacttctttcttgcttc |
961 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| |
|
|
| T |
27992670 |
agaaatagactttgcatttgagaacttctttcttgcttc |
27992708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 28048658 - 28048746
Alignment:
| Q |
17 |
catcaaggaggaggccagggagctgagttttttcccagtctctccagcaatgttcttaagggaagatatatcttgttgtgcctgtaaaa |
105 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
28048658 |
catcaaggaggatgccaaggaggtgagttttttcccagtctctccagcaatgttcttaagggaagagatatcctgttgtgcctgtaaaa |
28048746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 823 - 961
Target Start/End: Original strand, 28049875 - 28050010
Alignment:
| Q |
823 |
gtaagttactataagaaaggacacttactgaaaactttgacaaagtagctcgagcctcagcatctcttgctttgttctggtctccaaaaaattgagatga |
922 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||| ||||| ||| |||| || |||| | || ||||||||||||||||||||||| ||||| |
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|
| T |
28049875 |
gtaagttactgaaagaaaggacacatactgaaaactttgataaagttgcttgagcatccgcat---tagccttgttctggtctccaaaaaattgggatga |
28049971 |
T |
|
| Q |
923 |
cgaaatagatttagcatttgagaacttctttcttgcttc |
961 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| |
|
|
| T |
28049972 |
agaaatagactttgcatttgagaacttctttcttgcttc |
28050010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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