View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9628_low_11 (Length: 452)
Name: NF9628_low_11
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9628_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 434
Target Start/End: Original strand, 5316436 - 5316836
Alignment:
| Q |
10 |
attatacttgctgcttgaactatgttataagaaatattgctttgtatttgatatttttctgtgatttgcctagcatcaaggttaatctattttatttata |
109 |
Q |
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| T |
5316436 |
attatatttgctggttgaactatgttataagaaatattgctttgtatttgatatttttctgtcatttgccaagcatcaagattaatctattttatttata |
5316535 |
T |
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| Q |
110 |
cttgtggaacttctgggttactcatgaaccatgaacttatacccaaaattggaggtgacctacagttcaggaaaattgaaaaaagctatgtgcgagttaa |
209 |
Q |
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| T |
5316536 |
cttgtggaacttctgggttactcatgaatcatgaacttatacccaaaattggaggtgacctacagttcaggaaaattg-aaaaagctatgtgcgagtcaa |
5316634 |
T |
|
| Q |
210 |
gaaagaaatagaaaactgcatttttcatagaaaaatgaaatagctaagaaaccagtaagggtttcgaatttctagatggtacattgaccaggtgacttct |
309 |
Q |
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| T |
5316635 |
gaaagaaatagaaaactgcatttttcatagaaaaatgaaatagccaagaaaccagtaagggtttcgaatttctagatggtacattgaccaagtgacttct |
5316734 |
T |
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| Q |
310 |
atcttttgagctttttattttaaatcaaaacatatttttaaaaatactccgacttaaaatgggaccttcgtaaatgaatggtgggattatgctactcaaa |
409 |
Q |
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| T |
5316735 |
atcttttgag----ttatttt-------------------aaaatactccgacttaaaatgggaccttcgtaaatggatggtggaattaaactactcaaa |
5316811 |
T |
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| Q |
410 |
tttcggctcttaggttgaatatcaa |
434 |
Q |
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| T |
5316812 |
tttcggctcttaggttgaatatcaa |
5316836 |
T |
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