View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9628_low_12 (Length: 433)

Name: NF9628_low_12
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9628_low_12
NF9628_low_12
[»] chr2 (5 HSPs)
chr2 (9-424)||(37957845-37958260)
chr2 (9-346)||(37952110-37952447)
chr2 (27-424)||(37896930-37897327)
chr2 (24-207)||(44905646-44905830)
chr2 (24-207)||(28166801-28166985)
[»] chr3 (3 HSPs)
chr3 (25-315)||(11528454-11528744)
chr3 (24-339)||(39712822-39713137)
chr3 (114-207)||(3149622-3149715)
[»] chr4 (2 HSPs)
chr4 (22-207)||(34539264-34539449)
chr4 (24-207)||(11148747-11148931)
[»] chr7 (1 HSPs)
chr7 (22-207)||(38757782-38757968)
[»] chr1 (1 HSPs)
chr1 (22-80)||(13223324-13223382)


Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 9 - 424
Target Start/End: Original strand, 37957845 - 37958260
Alignment:
Q  9 catcatcaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactt 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37957845 catcaacaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactt 37957944  T
Q  109 tcaacattcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatctt 208  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37957945 tccacattcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctagctggaaatctt 37958044  T
Q  209 caatgtcctccacaaccccacaaaccttttattctttgcactcaaaatgactctgtcgcttttaccatcgtcgaatcctcggcagatttcaaccatctat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37958045 caatgtcctccacaaccccacaaaccttttattctttgcactcaaaatgactctgtcgcttttaccatcgtcgaatcctcggcagatttcaaccatctat 37958144  T
Q  309 caaccaaccaccaccccaaaaatcttaaagactataattatcttagtccaaaattaagccacaaaacaacctatgatgataatgacattgagaataacac 408  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  37958145 caaccaatcaccaccccaaaaatcttaaagactataattatcttagtccaaaattaagccgcaaaacaacctatgatggtaatgacattgagaataacac 37958244  T
Q  409 attcattttccctttg 424  Q
    ||||||||||||||||    
T  37958245 attcattttccctttg 37958260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 37952110 - 37952447
Alignment:
Q  9 catcatcaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactt 108  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37952110 catcaacaccaagaacaacaacaacttttcttcctctcacattcctcgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactt 37952209  T
Q  109 tcaacattcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatctt 208  Q
    ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37952210 tcctcattcaacaacccatttttctaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatctt 37952309  T
Q  209 caatgtcctccacaaccccacaaaccttttattctttgcactcaaaatgactctgtcgcttttaccatcgtcgaatcctcggcagatttcaaccatctat 308  Q
    || ||||||| || ||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||||| || ||| ||||||||||||| |    
T  37952310 cactgtcctctaccaccccacaaaccttttattctttgcactcaaaatgactccgtcacttttaccgtcatcgaatcttcagcaaatttcaaccatctct 37952409  T
Q  309 caaccaaccaccaccccaaaaatcttaaagactataat 346  Q
    |||||||||| ||||||||||||||  |||||| ||||    
T  37952410 caaccaaccaacaccccaaaaatctccaagactttaat 37952447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 27 - 424
Target Start/End: Complemental strand, 37897327 - 37896930
Alignment:
Q  27 caacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaaccca 126  Q
    |||||| ||||||||||||||||||||||||||||||||| || |||||| ||||||||  ||||  |||||||||||||||||  ||||||||||| ||    
T  37897327 caacaatttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctcattcaacaactca 37897228  T
Q  127 tttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatcttcaatgtcctccacaaccc 226  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    | ||| |||| ||||    
T  37897227 tttttgcaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatctaatctctccaccaccaccc 37897128  T
Q  227 cacaaaccttttattctttgcactcaaaatgactctgtcgcttttaccatcgtcgaatcctcggcagatttcaaccatctatcaaccaaccaccacccca 326  Q
    |||||||| ||||| || | ||||||||| || |||||| | |||||| || ||||| |||||||  ||||||||||||| ||| |||| ||||| ||||    
T  37897127 cacaaaccctttatcctctacactcaaaaagattctgtcacctttaccgtcatcgaaacctcggcgaatttcaaccatctttcagccaatcaccatccca 37897028  T
Q  327 aaaatcttaaagactataattatcttagtccaaaattaagccacaaaacaacctatgatgataatgacattgagaataacacattcattttccctttg 424  Q
    |||||||||||||||||||| |||||  |||||| ||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37897027 aaaatcttaaagactataatcatcttgttccaaagttaacacacaaaacaacctatgatgataatgacattgaaaataacacattcattttccctttg 37896930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 44905830 - 44905646
Alignment:
Q  24 caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac 123  Q
    |||||||||||| |||||||||||||||  |||||| || |||||| | ||||||||| ||| || || |||||||| | |  |||    ||| ||| |     
T  44905830 caacaacaacttatcttcctctcacattttttgactagcattttgctgatccagtctacgttaaatgcatattcttcgacccttttgcttatttaaccaa 44905731  T
Q  124 ccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct 207  Q
    ||||||||| ||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||| || ||||||||    
T  44905730 ccatttttgcaaaacaacacttccatcgctcaaaaaaatctctttctcttactcttcaacatttcttccctcttgccggaaatct 44905646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 28166985 - 28166801
Alignment:
Q  24 caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac 123  Q
    |||||||||||| ||||||| |||||||  ||||||||| |||||| |||||||||||  || || |  |||| ||| | |  |||    ||||||| |     
T  28166985 caacaacaacttatcttcctttcacattttttgacttgcattttgctggtccagtctacattaaatgaatatttttcgacccttttgcttattcaaccaa 28166886  T
Q  124 ccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct 207  Q
    ||||||||| |||||||||||||| ||||||||| |  | ||||||||||||||||||||||||||||||||| |||||||||||    
T  28166885 ccatttttgcaaaacaacacttccttctctcaaaaaaatttctttctcttactcttcaacatttcttccctcttgctggaaatct 28166801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 25 - 315
Target Start/End: Complemental strand, 11528744 - 11528454
Alignment:
Q  25 aacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaacc 124  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| ||||| ||||||||||||  |||    ||||||| | |    
T  11528744 aacaacaacttctcttcctctcacattcctcgacttgcattttgcaggtccagtctacgttaaacgcctattcttctatccttttgcttattcaaccaac 11528645  T
Q  125 catttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatcttcaatgtcctccacaac 224  Q
    |||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||    | ||| |||| ||    
T  11528644 catttttgcaaaacaacactaccatctctcaaaaaatctctttctcttactcttcaacatttcttccctcttgctggaaatctcatttctccaccaccac 11528545  T
Q  225 cccacaaaccttttattctttgcactcaaaatgactctgtcgcttttaccatcgtcgaatcctcggcagatttcaaccatctatcaaccaa 315  Q
    | || |||||||||||||| | |||  || | ||||||||||| ||||||||| |||||||||| ||||||||||||||||| || |||||    
T  11528544 cacaaaaaccttttattctctacaccgaagaagactctgtcgcctttaccatcatcgaatcctcagcagatttcaaccatctctcgaccaa 11528454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 24 - 339
Target Start/End: Complemental strand, 39713137 - 39712822
Alignment:
Q  24 caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac 123  Q
    ||||||| |||| ||||||||||||||| |||||||||| |||||| |||||| |||| | | ||||||||||||||||||  ||||  ||||| || |     
T  39713137 caacaactacttatcttcctctcacatttcttgacttgcattttgctggtccaatctacgctaaacgcttattcttctatccttttcctcattctaccaa 39713038  T
Q  124 ccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatcttcaatgtcctccacaa 223  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||   | ||||||||||||| |||||||| |||||||||||    | ||| |||| |    
T  39713037 ccatttttgcaaaacaacacttccatctctcaaacagtctctttcatgtgctcttcaacattttttccctcttgctggaaatctcatttctccaccacca 39712938  T
Q  224 ccccacaaaccttttattctttgcactcaaaatgactctgtcgcttttaccatcgtcgaatcctcggcagatttcaaccatctatcaaccaaccaccacc 323  Q
    || || |||||||||||||  |||||  || | ||||| |||   || |||||||| ||||||||| |||||||||||||||| |||| ||| |||||||    
T  39712937 ccacaaaaaccttttattcgctgcaccgaagaagactccgtcttcttcaccatcgttgaatcctcgtcagatttcaaccatctctcaaacaaacaccacc 39712838  T
Q  324 ccaaaaatcttaaaga 339  Q
      |||||||| |||||    
T  39712837 tgaaaaatctcaaaga 39712822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 3149622 - 3149715
Alignment:
Q  114 attcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatct 207  Q
    ||||||| | ||||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |||||||||||    
T  3149622 attcaaccagccatttttgcaaaacaacacttccatctctcgaaaaatctctttctcttactcttcaacatttcttccctcttgctggaaatct 3149715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 34539449 - 34539264
Alignment:
Q  22 aacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaaca 121  Q
    |||||||||||||| ||||||||||| |||  ||||||||| |||||| |||||| ||||  || || || |||||||| | |  |||    |||||||     
T  34539449 aacaacaacaacttatcttcctctcatattttttgacttgcattttgctggtccaatctacattaaatgcatattcttcgacccttttgcttattcaacc 34539350  T
Q  122 acccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatct 207  Q
    | ||||||| | |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| || ||||||||    
T  34539349 aaccattttcgcaaaacaacacttccatctctcaaaaaatctctttctcttactcttcaacatttcttccctcttgccggaaatct 34539264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 11148747 - 11148931
Alignment:
Q  24 caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac 123  Q
    |||||||||||| |||||||||||||||  ||||||||| |||||  ||||||||||| ||| || || |||||||| | |  |||    ||||||| |     
T  11148747 caacaacaacttatcttcctctcacattttttgacttgcattttgttggtccagtctacgttaaatgcatattcttcgacccttttacttattcaaccaa 11148846  T
Q  124 ccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct 207  Q
    ||||||||| |||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||| | |||||||||||    
T  11148847 ccatttttgcaaaacaacacttccatctctcaaaaaaatctctttctcttactgttcaacatttcttcccttttgctggaaatct 11148931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 38757968 - 38757782
Alignment:
Q  22 aacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaaca 121  Q
    |||||||||||||| ||||||||| |||||  ||| ||||| |||||  ||||||||||| ||| || || |||||||| | |  |||    |||||||     
T  38757968 aacaacaacaacttatcttcctctaacattttttgccttgcattttgttggtccagtctacgttaaatgcatattcttcgacccttttgcttattcaacc 38757869  T
Q  122 acccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct 207  Q
    | ||||||||| |||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||| || ||||||||    
T  38757868 aaccatttttgcaaaacaacacttccatctctcaaaaaaatctctttctcttactcttcaacatttcttccctcttgccggaaatct 38757782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 13223324 - 13223382
Alignment:
Q  22 aacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtct 80  Q
    |||||||||||||| ||||||||||| |||  || |||||| |||||| ||||||||||    
T  13223324 aacaacaacaacttatcttcctctcaaatttttttacttgcattttgctggtccagtct 13223382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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