View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9628_low_19 (Length: 339)
Name: NF9628_low_19
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9628_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 31643774 - 31644111
Alignment:
| Q |
1 |
tcgtatttttggttgtgctgcgaactttgatagtgcagcacaataaggcaaatgcgaccgaaattgcaaaccgttacacaaatctctaaaacctttatat |
100 |
Q |
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| T |
31643774 |
tcgtatttttggttgtgctgcgaactttgatagtgcagcacaataaggcaaatgcgaccaaaattgcaaaccgttacacaaatctctaaaacttttatat |
31643873 |
T |
|
| Q |
101 |
tgt-----------agttgcagaccggaattttaaatgatgtttcacacttataacattattatggatctaaaatggaaacacaagaaaaaatggattaa |
189 |
Q |
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| T |
31643874 |
tgcggttgaattgcagttgcagaccggaattttaaagtatgtttcacacttataacattattatggatctaaaatggaaacacaagaaaaaatggattaa |
31643973 |
T |
|
| Q |
190 |
tttaataaaacatagatatatgaaattaacatgaaaatattatgtgtgtacttgaaatttatatctatgagcagtatagtactatacctggaaaaaaggg |
289 |
Q |
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| T |
31643974 |
tttaataaaacatagatatatgaaattaacatgaaaatattatgtgtgtacttgaaatttatatctatgagcagtatagtactatacctggaaaaaaggg |
31644073 |
T |
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| Q |
290 |
taccacaatcacatttatattctctagtaccacaggtt |
327 |
Q |
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| T |
31644074 |
taccacaatcacatttatattctcgagtaccacaggtt |
31644111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 42287231 - 42287194
Alignment:
| Q |
286 |
agggtaccacaatcacatttatattctctagtaccaca |
323 |
Q |
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| T |
42287231 |
agggtgccacaatcacatctatattctctagtaccaca |
42287194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 33186860 - 33186812
Alignment:
| Q |
275 |
acctggaaaaaagggtaccacaatcacatttatattctctagtaccaca |
323 |
Q |
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| T |
33186860 |
acctggaaaaaacggttccacaatcacatttatactctctagaaccaca |
33186812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 40749501 - 40749467
Alignment:
| Q |
289 |
gtaccacaatcacatttatattctctagtaccaca |
323 |
Q |
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| T |
40749501 |
gtaccacaatcacacttatattctctagtaccaca |
40749467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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