View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9628_low_2 (Length: 740)
Name: NF9628_low_2
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9628_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 1 - 732
Target Start/End: Complemental strand, 20551049 - 20550318
Alignment:
| Q |
1 |
atgacactaacaggttaacaccggacaaaatttaataaaacggaaaaattgaatataaccacacttgtcaatgtcacgttggtatcagacaccatacatg |
100 |
Q |
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| T |
20551049 |
atgacactaacaggttaacaccggtcaaaatttaataaaacggaaaaattgaatataaccacacttgtcaatgtcacgtcggtatcagacaccatacatg |
20550950 |
T |
|
| Q |
101 |
tctttaatgagaagtgttggtgctacatagttcaacactactacttccttattttatttttgtttcatttgctttaacaaatgtattcttgactttcgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20550949 |
tctttaatgagaagtgttggtgctacatagttcaacactactacttccttattttatttttgtttcatttgctttaacaaatgtattcttgactttcgaa |
20550850 |
T |
|
| Q |
201 |
tttactgaattatgaaggcagagaggctatcatggagcaatgaagttgccaatgtggttttggatttttctgttagaagtgcaactacacatactccaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20550849 |
tttactgaattatgaaggcagagaggctatcatggagcaatgaagttgccaatgtggttttggatttttctgttagaactgcaactacacatactccaca |
20550750 |
T |
|
| Q |
301 |
atttttgggtcttccacaaggagcatggtctcaaaatggtggatttgaaacagccggagaaggagttgttattgggttggttgacaccggcatagatcca |
400 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20550749 |
atttttgggtctgccacaaggagcatggtctcaaaatggtggatttgaaacagccggagaaggagttgttattgggttggttgacaccggcatagatcca |
20550650 |
T |
|
| Q |
401 |
acacaccctagttttagcgatagtaaatctgaaaatccgtatcctgttcctgctcatttttctggtatctgcgaggttactcgtgattttccatctggct |
500 |
Q |
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| T |
20550649 |
acacaccctagttttagcgatagtaaatctgaaaatccgtatcctgttcctgctcatttttctggtatctgcgaggttactcgtgattttccatctggct |
20550550 |
T |
|
| Q |
501 |
cttgcaataggaaacttgttggggcacgacacttcgcagcatctgctataaccaggggagtttttaatatgtctcaagactatgcttctccctttgatgg |
600 |
Q |
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| T |
20550549 |
cttgcaataggaaacttgttggggcacgacacttcgcagcatctgctataaccaggggaatttttaatatgtctcaagactatgcttctccctttgatgg |
20550450 |
T |
|
| Q |
601 |
cgatggccatggcccgtgagtttttggcatttcaaaatcagtgttatgttttactctagtttatcatgattacttaatcggtttattctatcaaattcca |
700 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
20550449 |
cgatggccatggcacgtgagtttttgtcatttcaaaatcagtgttatgttttactctaatttatcatgattacttaactggtttattctatcaaattcca |
20550350 |
T |
|
| Q |
701 |
ttcatcttctaatatcgttttgaagttttctc |
732 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
20550349 |
ttcatcttctaatatcgttttgaagttttctc |
20550318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 215 - 555
Target Start/End: Complemental strand, 37075702 - 37075362
Alignment:
| Q |
215 |
aaggcagagaggctatcatggagcaatgaagttgccaatgtggttttggatttttctgttagaagtgcaactacacatactccacaatttttgggtcttc |
314 |
Q |
| |
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|||||||||| ||||||| |||| | ||||| ||||||||||||||||||||||||| ||| |||||| ||||| |||||||| || || ||||| | |
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| T |
37075702 |
aaggcagagaagctatcaaggagaagagaagtgtccaatgtggttttggatttttctgtaagatctgcaacaacacacactccacagttcttaggtctgc |
37075603 |
T |
|
| Q |
315 |
cacaaggagcatggtctcaaaatggtggatttgaaacagccggagaaggagttgttattgggttggttgacaccggcatagatccaacacaccctagttt |
414 |
Q |
| |
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|||| ||||| |||| |||| ||||| |||||||| || ||||||||| | ||||| || |||||||| ||||| |||| |||||||||||||| |
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| T |
37075602 |
cacagggagcttggtttcaatcaggtgggtttgaaactgctggagaaggaatcactattgcatttgttgacactggcattgatcatacacaccctagttt |
37075503 |
T |
|
| Q |
415 |
tagcgatagtaaatctgaaaatccgtatcctgttcctgctcatttttctggtatctgcgaggttactcgtgattttccatctggctcttgcaataggaaa |
514 |
Q |
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| ||| |||||| ||| |||| | || |||||||| |||||||| | ||| |||||||||| ||||||||||| || || ||||||||||| |
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| T |
37075502 |
tgctgatgataaatccgaacatccattcaatgctcctgctcggttttctggcacctgtgaggttactccggattttccatccggttcctgcaataggaag |
37075403 |
T |
|
| Q |
515 |
cttgttggggcacgacacttcgcagcatctgctataaccag |
555 |
Q |
| |
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|||||||| || || || || |||||||||||||||||||| |
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| T |
37075402 |
cttgttggagcccgtcattttgcagcatctgctataaccag |
37075362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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