View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9628_low_23 (Length: 328)
Name: NF9628_low_23
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9628_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 73 - 313
Target Start/End: Original strand, 35425475 - 35425719
Alignment:
| Q |
73 |
aaaggcaaccatatttagtgctagttctcaagattattttgatattacgtgtattgatgctactttatttactgaaatgagctagtttttccttgtgaaa |
172 |
Q |
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| T |
35425475 |
aaaggcaaccatatttagtgctagttctcaagattattttgatattacgtgtattgatgctactttatttactgaaatgagctagtttttccttgtgaaa |
35425574 |
T |
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| Q |
173 |
ataatattgtagta----caagcattgctcttgtttgtgtgtgagagagagagtcaatagtagtataaaactatatcataatattaaaacctaaagaaca |
268 |
Q |
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| T |
35425575 |
ataatattgtagtacaagcaagcattgctcttgtttgtgtgtgagagagagaatcaatagtagtataaaactatatcataatattaaaacctaaagaaca |
35425674 |
T |
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| Q |
269 |
atttttccacatgagaagaaaatgagagaaaagtaagatgttgat |
313 |
Q |
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| T |
35425675 |
atttttccacgtgagaagaaaatgagagaaaagtaagatgttgat |
35425719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 35425352 - 35425417
Alignment:
| Q |
10 |
ataatagacgagattattctgagtttgcttttattagtagtaagtttcttaatctagttgtaaaaa |
75 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35425352 |
ataatagacgagattattctgagtttgcttttattagtagtaagtttcttaatctagttgtaaaaa |
35425417 |
T |
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