View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9628_low_24 (Length: 322)
Name: NF9628_low_24
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9628_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 14788711 - 14788566
Alignment:
| Q |
16 |
cacttatcgggtccaccattttgattctgagcataaataaatattgaatttcaaaaccgtagcttagttttcagcgcgcaaacgagaaagtgcttaattt |
115 |
Q |
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| T |
14788711 |
cacttattgggtccaccattttgattctgagtataaataaatattgaatttcaaaaccgtagtttagttttcagcgcgcaaacgagaaagtgcttaattt |
14788612 |
T |
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| Q |
116 |
gaaaatggagttttcctcatctcagaaactttgcttgcacgtgagt |
161 |
Q |
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| T |
14788611 |
gaaaatggagttttcctcatctcagaaactttgcttgcacgtgagt |
14788566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 191 - 306
Target Start/End: Complemental strand, 14788542 - 14788427
Alignment:
| Q |
191 |
gtaacaaaattttcacatacatttatttttgtatcatttcctcgttgatttggttatatgaatctattcaaattccgtttctactattttccgatttgtt |
290 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14788542 |
gtaacaaaattttcacatacatttatttttgtatgatttcctcgttgatttggttatatgaatctgttcaaattccgtttctactattttccgatttgtt |
14788443 |
T |
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| Q |
291 |
catatacatttgtgat |
306 |
Q |
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| T |
14788442 |
catatacatttgtgat |
14788427 |
T |
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