View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9628_low_29 (Length: 270)
Name: NF9628_low_29
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9628_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 85 - 254
Target Start/End: Original strand, 41183745 - 41183914
Alignment:
| Q |
85 |
agtgtgagtataaaatgcaatatgcatttgaagggattctaatttgtttaactattgtttctagaaagtgaatatttttatgaagtgtgtttttataact |
184 |
Q |
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| T |
41183745 |
agtgtgagtataaaatgcaatatgcatttgaagggattctaatttgtttaactattgtttctagaaagcgaatatttttatgaagtgtgtttttataact |
41183844 |
T |
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| Q |
185 |
ttcttatgaaatggtttctgctattactaaaaatatatatgtctcattggataattatatcattggatat |
254 |
Q |
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| T |
41183845 |
ttcttatgaaatggtttctgctattactaaaaatatatatgtctcattggataattatatcattggatat |
41183914 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 41183675 - 41183718
Alignment:
| Q |
18 |
catcatgttagtttatatatgtattgttgtgatccttgaaggta |
61 |
Q |
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| T |
41183675 |
catcatgttagtttatatatgtattgttgtgatccttgaaggta |
41183718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 40234370 - 40234320
Alignment:
| Q |
155 |
aatatttttatgaagtgtgtttttataactttcttatgaaatggtttctgc |
205 |
Q |
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| T |
40234370 |
aatatttttatgaagggtgtttttataactttcttatggaacagtttctgc |
40234320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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