View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9628_low_33 (Length: 254)
Name: NF9628_low_33
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9628_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 13189917 - 13190069
Alignment:
| Q |
52 |
aaaaatgttaacctgcttttgaaaggtaaaaccggtgaactgggtccactcaagaaccagctactaccacaataacttttcagcatgttcatcactcaaa |
151 |
Q |
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| T |
13189917 |
aaaaatgttaacctgctgttgaaaggtaaaaccggtgaattgggtcctctcaagaaccagctactaccacaataacttttcagcatgttcatcactcaaa |
13190016 |
T |
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| Q |
152 |
atag----ttaatcaatcaatgacaagaaaccgacaattgaagctcctgaaag |
200 |
Q |
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| T |
13190017 |
acagttgcttaatcaatcaatgacaagaaaccgacaattgaagctcatgaaag |
13190069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 13181826 - 13181927
Alignment:
| Q |
1 |
aaatgaaccaaataaagtaaactgcagactaaataaacaaagagattttgaaaaaatgttaacctgcttttgaaaggtaaaaccggtgaactgggtccac |
100 |
Q |
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| T |
13181826 |
aaatcaaccaaacaaagtaaactgtagactaaataaacaaagagattatgaaaa-atgttaacctgcttttgaaaggtaaaaccggtgaattgggtcctc |
13181924 |
T |
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| Q |
101 |
tca |
103 |
Q |
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||| |
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| T |
13181925 |
tca |
13181927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 13190099 - 13190145
Alignment:
| Q |
196 |
gaaaggtcaaagtaacagtaacaagagacaggatacaaagatagaat |
242 |
Q |
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| T |
13190099 |
gaaaggtcaaagtaacagtaacaagagacaggatacaaagatagaat |
13190145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 13189853 - 13189894
Alignment:
| Q |
6 |
aaccaaataaagtaaactgcagactaaataaacaaagagatt |
47 |
Q |
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| T |
13189853 |
aaccaaataacataaactgcagactaaataaacaaagagatt |
13189894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 13181985 - 13182020
Alignment:
| Q |
156 |
ttaatcaatcaatgacaagaaaccgacaattgaagc |
191 |
Q |
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| T |
13181985 |
ttaatcaatcaatgacaagaaaccaacaattgaagc |
13182020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 13182062 - 13182108
Alignment:
| Q |
196 |
gaaaggtcaaagtaacagtaacaagagacaggatacaaagatagaat |
242 |
Q |
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| T |
13182062 |
gaaaggtcaaagtaatagtaaaaagagacagcatacaaagaaagaat |
13182108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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