View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9628_low_35 (Length: 251)
Name: NF9628_low_35
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9628_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7010384 - 7010151
Alignment:
| Q |
1 |
cacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttctataaaacacaacaattcaaacaacaaatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7010384 |
cacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttctataaaacacaacaattcaaacaacaaatta |
7010285 |
T |
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| Q |
101 |
acacatcaaccgtacaaaattcatcgctcgtaacacaaaatcggattgtttgcagtcagaaattctccgcattcattgagccgacacatcatgtagttgt |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7010284 |
acacatcaaccgtacaaaattcatcgcttgtaacacaaaatcggattgtttgcagtcagaaattctccgcattcattgagccggcacatcatgtagttgt |
7010185 |
T |
|
| Q |
201 |
tggatcctgatcaaattccaacgaccagtgatgt |
234 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
7010184 |
tggatcctgatcaaattccaacgaccaatgatgt |
7010151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7007306 - 7007083
Alignment:
| Q |
1 |
cacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttctataaaacacaacaattcaaacaacaaatta |
100 |
Q |
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| T |
7007306 |
cacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttctatataacacaa----------aacaaatta |
7007217 |
T |
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| Q |
101 |
acacatcaaccgtacaaaattcatcgctcgtaacacaaaatcggattgtttgcagtcagaaattctccgcattcattgagccgacacatcatgtagttgt |
200 |
Q |
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| T |
7007216 |
acacatcaaccctacaaacttcatcactcgaaacacaaattcggattatctgaagtcagaaattctccgcattcacggagtcggcacatcatgcagttgt |
7007117 |
T |
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| Q |
201 |
tggatcctgatcaaattccaacgaccagtgatgt |
234 |
Q |
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| T |
7007116 |
tggatccatatcaaattccaacgaccaatgatgt |
7007083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1358641 - 1358572
Alignment:
| Q |
1 |
cacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttct |
70 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1358641 |
cacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttct |
1358572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1374193 - 1374124
Alignment:
| Q |
1 |
cacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttct |
70 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1374193 |
cacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttct |
1374124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1394740 - 1394671
Alignment:
| Q |
1 |
cacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttct |
70 |
Q |
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| T |
1394740 |
cacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttct |
1394671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1350735 - 1350666
Alignment:
| Q |
1 |
cacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttct |
70 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1350735 |
cacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttct |
1350666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1384389 - 1384320
Alignment:
| Q |
1 |
cacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttct |
70 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1384389 |
cacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttct |
1384320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1390494 - 1390425
Alignment:
| Q |
1 |
cacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttct |
70 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1390494 |
cacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttct |
1390425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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